Australian Microbiome Amplicons ITS 102.100.100/140267 JC328
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2021-01-06 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/pva5-7z67 |
| am_environment | Soil |
| ammonium_nitrogen_wt (mg/kg) | 2.0 |
| ammonium_nitrogen_wt_meth | meth_2.1 |
| amplicon | ITS |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/its/BPAOPS-965/ |
| bioplatforms_dataset_id | 102.100.100/401916 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM0002 |
| biotic_relationship | Free-living |
| boron_hot_cacl2 (mg/kg) | 0.31 |
| boron_hot_cacl2_meth | meth_2.1 |
| ccg_jira_ticket | BPAOPS-965 |
| clay (%) | 21.49 |
| clay_meth | meth_2.1 |
| coarse_sand (%) | 11.04 |
| coarse_sand_meth | meth_2.1 |
| collection_date | 2020-04-10T06:30:00 |
| color | GRWH |
| comments | 140267_ITS_JC328_AATGTCCG-ATATACAC |
| conductivity (dS/m) | 0.025 |
| conductivity_meth | meth_2.1 |
| data_type | ITS |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401916 |
| date_of_transfer | 2020-10-08 |
| date_of_transfer_to_archive | 2020-10-12 |
| date_since_change_in_land_use | 2005 |
| depth (m) | 0.2 |
| depth_lower (m) | 0.3 |
| depth_upper (m) | 0.2 |
| description | MiSeq data package |
| dilution_used | neat |
| dtpa_copper (mg/kg) | 0.47 |
| dtpa_copper_meth | meth_2.1 |
| dtpa_iron (mg/kg) | 138.7 |
| dtpa_iron_meth | meth_2.1 |
| dtpa_manganese (mg/kg) | 1.04 |
| dtpa_manganese_meth | meth_2.1 |
| dtpa_zinc (mg/kg) | 0.27 |
| dtpa_zinc_meth | meth_2.1 |
| elev (m) | 261.0 |
| env_broad_scale | 1 Conservation and Natural Environments |
| env_local_scale | 1.2.2 Surface water supply |
| env_medium | Soil [ENVO_00001998] |
| exc_aluminium (meq/100g) | 0.75 |
| exc_aluminium_meth | meth_2.1 |
| exc_calcium (meq/100g) | 1.09 |
| exc_calcium_meth | meth_2.1 |
| exc_magnesium (meq/100g) | 1.14 |
| exc_magnesium_meth | meth_2.1 |
| exc_potassium (meq/100g) | 0.11 |
| exc_potassium_meth | meth_2.1 |
| exc_sodium (meq/100g) | 0.2 |
| exc_sodium_meth | meth_2.1 |
| fine_sand (%) | 34.1 |
| fine_sand_meth | meth_2.1 |
| flow_id | JC328 |
| folder_name | 20201008_AM_ITS_UNSW_JC328 |
| general_env_feature | Temperate |
| geo_loc_name | Australia:South Australia |
| gravel (%) | 55-60 |
| gravel_meth | meth_2.1 |
| horizon | A |
| immediate_previous_land_use | 3.2.1 Native/exotic pasture mosaic |
| index | AATGTCCG-ATATACAC |
| lat_lon (decimal_degrees) | -35.09698 138.670996 |
| latitude (decimal_degrees) | -35.09698 |
| local_class | Chromosols |
| local_class_meth | meth_2.27 |
| longitude (decimal_degrees) | 138.670996 |
| nitrate_nitrogen (mg/kg) | 2.0 |
| nitrate_nitrogen_meth | meth_2.1 |
| nucl_acid_ext | meth_3.1.1 |
| omics | Genomics |
| organic_carbon (%) | 1.27 |
| organic_carbon_meth | meth_2.1 |
| pass_fail | P |
| ph | 4.4 |
| ph_meth | meth_2.1 |
| ph_solid_h2o | 5.7 |
| ph_solid_h2o_meth | meth_2.1 |
| phosphorus_colwell (mg/kg) | 1e-10 |
| phosphorus_colwell_meth | meth_2.1 |
| potassium_colwell (mg/kg) | 85.0 |
| potassium_colwell_meth | meth_2.1 |
| profile_position | Mid slope |
| reads | 76634.0 |
| samp_collect_device | meth_1.1 |
| sample_attribution | Martin Breed |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/140267 |
| sample_metadata_ingest_date | 2021-04-23 11:16:15 |
| sample_metadata_ingest_file | BREED_AM_Metadata_v3_xlsx |
| sample_metadata_update_history | All_soil_noAntarctic_Methods_FILLED_UPDATE_xlsx; AM_curate_geo_loc_name_UPDATE_xlsx; SOIL_local_class_meth_UPDATE_xlsx; AM_add_meth_for_ALL_DB_UPDATE_xlsx; vegetation_float_to_int_UPDATE_xlsx; |
| sample_site_location_description | Mount Bold |
| sample_submitter | Emma Peters |
| sample_type | Soil |
| sand (%) | 45.14 |
| sand_meth | meth_2.1 |
| sequencing_facility | Ramaciotti |
| silt (%) | 33.37 |
| silt_meth | meth_2.1 |
| slope_aspect (direction_or_degrees) | E |
| slope_gradient (%) | 15.0 |
| source_mat_id | 102.100.100/140267 |
| store_cond | frozen @ -20c |
| sulphur (mg/kg) | 1.6 |
| sulphur_meth | meth_2.1 |
| target | ITS |
| temp (degC) | 17.6 |
| temp_meth | BOM data |
| texture | 3.0 |
| texture_meth | meth_2.1 |
| ticket | BPAOPS-965 |
| tillage | Conservation Tillage or Zero Tillage |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/140267 |
| utc_date_sampled | 2020-04-10 |
| utc_time_sampled | 06:30:00 |
| vegetation_dom_grasses (%) | 60 |
| vegetation_dom_shrubs (%) | A.pycnantha(30)E. leucoxylon (60) |
| vegetation_dom_trees (%) | 10 |
| vegetation_total_cover (%) | 80.0 |
| vegetation_type | Woodland |
| water_content (%) | 5.04 |
| water_content_soil_meth | meth_2.1 |