Australian Microbiome Amplicons ITS 102.100.100/142334 JY4PG
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2022-01-19 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/z9ye-3835 dataset_id:102.100.100/401940 |
| am_environment | Soil |
| amplicon | ITS |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/its/BPAOPS-1147/ |
| bioplatforms_dataset_id | 102.100.100/401939 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM0023 |
| biotic_relationship | Free-living |
| ccg_jira_ticket | BPAOPS-1147 |
| collection_date | 2019-02-16T18:25:00 |
| comments | 142334_ITS_JY4PG_TGACCTCC-CTAGAGCT |
| crop_rotation_1yr_since_present | No crop |
| crop_rotation_2yrs_since_present | No crop |
| crop_rotation_3yrs_since_present | No crop |
| crop_rotation_4yrs_since_present | No crop |
| crop_rotation_5yrs_since_present | No crop |
| data_type | ITS |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401939 |
| date_of_transfer | 2021-10-21 |
| date_of_transfer_to_archive | 2021-10-29 |
| description | MiSeq data package |
| dilution_used | 1:10 |
| env_broad_scale | 1 Conservation and Natural Environments |
| env_local_scale | 1.2.1 Biodiversity |
| env_medium | Soil [ENVO_00001998] |
| flow_id | JY4PG |
| folder_name | 20211029_AM_ITS_UNSW_JY4PG |
| general_env_feature | Arid |
| geo_loc_name | Antarctica:Windmill Islands |
| horizon | A |
| immediate_previous_land_use | 1.2.1 Biodiversity |
| index | TGACCTCC-CTAGAGCT |
| lat_lon (decimal_degrees) | -66.367761 110.585271 |
| latitude (decimal_degrees) | -66.367761 |
| local_class | LatLon out of range |
| local_class_meth | meth_2.27 |
| longitude (decimal_degrees) | 110.585271 |
| nucl_acid_ext | meth_3.1.10 |
| omics | Genomics |
| pass_fail | P |
| reads | 64900.0 |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/142334 |
| sample_metadata_ingest_date | 2021-10-11 15:38:05 |
| sample_metadata_ingest_file | AM_ContextualMetadata_AM0023_Ferrari_V1_xlsx |
| sample_metadata_update_history | free_living_biotic_relationship_UPDATE_xlsx; AM_add_meth_for_ALL_DB_UPDATE_xlsx; |
| sample_site_location_description | Robinson Ridge |
| sample_type | Soil |
| sequencing_facility | Ramaciotti |
| slope_aspect (direction_or_degrees) | 319.065979 |
| source_mat_id | 102.100.100/142334 |
| target | ITS |
| ticket | BPAOPS-1147 |
| tillage | Zero tillage |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/142334 |
| utc_date_sampled | 2019-02-16 |
| utc_time_sampled | 18:25:00 |
| vegetation_type | Desert |