Australian Microbiome Amplicons ITS 102.100.100/401572 KG28C
Dataset size is: 0.00 Bit
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2022-09-27 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/krnh-rj70 |
| am_environment | Soil |
| ammonium_nitrogen_wt (mg/kg) | 3.6062452421 |
| ammonium_nitrogen_wt_meth | meth_2.1 |
| amplicon | ITS |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/its/BPAOPS-1293/ |
| bioplatforms_dataset_id | 102.100.100/401941 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM0024 |
| biotic_relationship | Free-living |
| ccg_jira_ticket | BPAOPS-1293 |
| clay (%) | 5.91 |
| clay_meth | meth_1.23 |
| collection_date | 2021-02-03T00:00:00 |
| collection_permit | SL102346 |
| comments | 401572_ITS_KG28C_ATTGGGCT-ACGACGTG |
| conductivity (dS/m) | 0.02 |
| conductivity_meth | meth_2.1 |
| crop_rotation_1yr_since_present | No crop |
| crop_rotation_2yrs_since_present | No crop |
| crop_rotation_3yrs_since_present | No crop |
| crop_rotation_4yrs_since_present | No crop |
| crop_rotation_5yrs_since_present | No crop |
| data_type | ITS |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401941 |
| date_of_transfer | 2022-06-29 |
| date_of_transfer_to_archive | 2022-06-30 |
| density (kg/m3) | 3.2168821978 |
| density_meth | meth_1.23 |
| depth (m) | 0.0 |
| depth_lower (m) | 0.1 |
| depth_upper (m) | 0.0 |
| description | MiSeq data package |
| dilution_used | Neat |
| env_broad_scale | 1 Conservation and Natural Environments |
| env_local_scale | 1.1.1 Strict nature reserve |
| env_medium | Soil [ENVO_00001998] |
| flow_id | KG28C |
| folder_name | 20220617_AM_ITS_UNSW_KG28C_updated |
| funding_agency | Australian Microbiome Initiative; Saving Our Species (SOS) Project Grant [DPIE (former OEH); NSW] |
| general_env_feature | Temperate |
| geo_loc_name | Australia:Sydney |
| index | ATTGGGCT-ACGACGTG |
| lat_lon (decimal_degrees) | -33.6547 150.74571 |
| latitude (decimal_degrees) | -33.6547 |
| local_class | Chromosol |
| local_class_meth | meth_2.27 |
| longitude (decimal_degrees) | 150.74571 |
| microbial_biomass | 6.9131645919 |
| microbial_biomass_meth | meth_1.23 |
| nitrate_nitrogen (mg/kg) | 0.9445829622 |
| nitrate_nitrogen_meth | meth_2.1 |
| omics | Genomics |
| organic_carbon (%) | 0.0025800368 |
| organic_carbon_meth | meth_2.1 |
| pass_fail | P |
| pcr_plate_name | MAZ10492_ITS_SetA |
| ph_solid_h2o | 5.15 |
| ph_solid_h2o_meth | meth_2.1 |
| reads | 59178.0 |
| samp_collect_device | meth_1.23 |
| samp_mat_process | meth_1.23 |
| sample_attribution | Kumari Rajapaksha Prathirajage; Western Sydney University |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/401572 |
| sample_metadata_ingest_date | 2022-12-08 16:41:48 |
| sample_metadata_ingest_file | Sample_submission_sheet_soil_20221207_schema_v3_vocab_2_0_3_AM0024_Powell_xlsx |
| sample_site_location_description | Londonderry Reserve |
| sample_submitter | Kumari Rajapaksha Prathirajage |
| sample_type | Soil |
| sand (%) | 87.09 |
| sand_meth | meth_1.23 |
| sequencing_facility | Ramaciotti |
| silt (%) | 7.0 |
| silt_meth | meth_1.23 |
| source_mat_id | 102.100.100/401572 |
| store_cond | frozen |
| synonyms | 25_2 |
| target | ITS |
| texture | Loamy sand |
| texture_meth | meth_1.23 |
| ticket | BPAOPS-1293 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/401572 |
| utc_date_sampled | 2021-02-03 |
| vegetation_dom_grasses (%) | Themeda australis (3%); Imperata cylindrica (2.5%); Lomandra multiflora (1.5%); Aristida vagans (1%) |
| vegetation_dom_grasses_meth | meth_2.28 |
| vegetation_dom_shrubs (%) | Melaleuca decora (8%); Exocarpos cupressiformis (2%) |
| vegetation_dom_shrubs_meth | meth_2.28 |
| vegetation_dom_trees (%) | Eucalyptus parramattensis (1%); Angophora subvelutina (3%); Eucalyptus Tereticornis (5%); Angophora floribunda (3%) |
| vegetation_dom_trees_meth | meth_2.28 |
| vegetation_type | Woodland |
| water_content (%) | 25.2225519288 |
| water_content_soil_meth | meth_2.1 |