Australian Microbiome Metagenomics Analysed 102.100.100/139735

Maria Island, MGSD

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Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
Access Control Date 2022-11-09
Access Control Mode date
Sequence Data Type metagenomics-analysed
Related Data doi:10.25953/z3tc-a185
alkalinity (μmol/kg) 2333.84
alkalinity_meth meth_2.2
allo (mg/m3) 0.013
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.01
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 1e-10
ammonium_meth meth_2.2
analysis_date 2022-08-10
analysis_method https://github.com/AusMicrobiome/metagenome
analysis_name 139735_MGSD_CSIRO
analysis_qc QC report included
anth (mg/m3) 1e-10
anth_meth meth_2.2
archive_ingestion_date 2022-08-19
asta (mg/m3) 1e-10
asta_meth meth_2.2
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-analysed/BPAOPS-1313/MAI_MGSD_1/
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
but_fuco (mg/m3) 0.03
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
chlorophyll_a (mg/m3) 0.246
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.055
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.038
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.023
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 0.7674
chlorophyll_ctd_meth meth_2.2
collection_date 2018-06-05
computational_infrastructure CSIRO
conductivity_aqueous (S/m) 4.3059
conductivity_aqueous_meth meth_2.2
cphlide_a (mg/m3) 0.023
cphlide_a_meth meth_2.2
data_context Metagenomics
data_generated 2022-08-19
data_type MGSD
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.0.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
dataset_id_description Bioplatforms Australia
date_of_transfer 2022-08-11
density (kg/m3) 1026.4489
density_meth meth_2.2
depth (m) 0.0
depth_lower (m) 0.0
depth_upper (m) 0.0
description Metagenome Analysed
diadino (mg/m3) 0.011
diadino_meth meth_2.2
diato (mg/m3) 1e-10
diato_meth meth_2.2
dino (mg/m3) 1e-10
dino_meth meth_2.2
dv_cphl_a (mg/m3) 1e-10
dv_cphl_a_and_cphl_a (mg/m3) 0.246
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.055
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
folder MAI_MGSD_1
folder_name MAI_MGSD_1
fuco (mg/m3) 0.033
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Tasman Sea coastal waters of continental Australia [GAZ:00143737]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.05
hex_fuco_meth meth_2.2
imos_site_code NRSMAI
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -42.5967 148.2333
latitude (decimal_degrees) -42.5967
longitude (decimal_degrees) 148.2333
lut (mg/m3) 1e-10
lut_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
neo (mg/m3) 0.01
neo_meth meth_2.2
nitrate (μmol/L) 2.9
nitrate_meth meth_2.2
nitrite (μmol/L) 0.43
nitrite_meth meth_2.2
nrs_sample_code MAI20180605_0
nrs_trip_code MAI20180605
nucl_acid_ext meth_3.1.9
omics metagenomics
oxygen (μmol/L) 251.8
oxygen_ctd_vol (mL/L) 246.8496
oxygen_ctd_vol_meth meth_2.2
oxygen_meth meth_2.2
perid (mg/m3) 1e-10
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 0.31
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 7600.0
picoeukaryotes_meth meth_2.2
pras (mg/m3) 0.021
pras_meth meth_2.2
prochlorococcus (cells/mL) 978.0
prochlorococcus_meth meth_2.2
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
salinity (PSU) 35.4973
salinity_lab (PSU) 35.504
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 1.5
samp_vol_we_dna_ext (L) 1.5
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.0_202303211058.db
sample_id 102.100.100/139735
sample_id_description Bioplatforms Australia
sample_metadata_ingest_date 2022-11-29_00:00:00
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Maria Island
sample_submission_date 2022-08-11
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 19.0
secchi_depth_meth meth_2.2
silicate (μmol/L) 1.1
silicate_meth meth_2.2
source_mat_id 102.100.100/139735
store_cond meth_1.4
synechococcus (cells/mL) 12060.5
synechococcus_meth meth_2.2
system_used CSIRO HPC
temp (degC) 14.5942
temp_meth meth_2.2
ticket BPAOPS-1313
total_co2 (μmol/kg) 2092.23
total_co2_meth meth_2.2
turbidity (NTU) 0.5746
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/139735
utc_date_sampled 2018-06-05
utc_time_sampled 23:30:00
viola (mg/m3) 0.004
viola_meth meth_2.2
zea (mg/m3) 0.005
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 17.1063
zooplankton_biomass_meth meth_2.2int