Australian Microbiome Metagenomics Analysed 102.100.100/141139

Maria Island, MGSD

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Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
Access Control Date 2022-11-09
Access Control Mode date
Sequence Data Type metagenomics-analysed
Related Data doi:10.25953/z3tc-a185
alkalinity (μmol/kg) 2317.72
alkalinity_meth meth_2.2
allo (mg/m3) 0.094
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.051
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.19
ammonium_meth meth_2.2
analysis_date 2022-08-10
analysis_method https://github.com/AusMicrobiome/metagenome
analysis_name 141139_MGSD_CSIRO
analysis_qc QC report included
anth (mg/m3) 0.009
anth_meth meth_2.2
archive_ingestion_date 2022-08-19
asta (mg/m3) 1e-10
asta_meth meth_2.2
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-analysed/BPAOPS-1313/MAI_MGSD_1/
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
but_fuco (mg/m3) 0.046
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
chlorophyll_a (mg/m3) 1.572
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.325
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.234
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.158
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 0.6026
chlorophyll_ctd_meth meth_2.2
collection_date 2020-10-20
computational_infrastructure CSIRO
conductivity_aqueous (S/m) 4.0818
conductivity_aqueous_meth meth_2.2
cphlide_a (mg/m3) 0.034
cphlide_a_meth meth_2.2
data_context Metagenomics
data_generated 2022-08-19
data_type MGSD
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.0.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
dataset_id_description Bioplatforms Australia
date_of_transfer 2022-08-11
density (kg/m3) 1026.5872
density_meth meth_2.2
depth (m) 0.0
depth_lower (m) 0.0
depth_upper (m) 0.0
description Metagenome Analysed
diadino (mg/m3) 0.105
diadino_meth meth_2.2
diato (mg/m3) 0.016
diato_meth meth_2.2
dino (mg/m3) 1e-10
dino_meth meth_2.2
dv_cphl_a (mg/m3) 1e-10
dv_cphl_a_and_cphl_a (mg/m3) 1.572
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.325
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
folder MAI_MGSD_1
folder_name MAI_MGSD_1
fuco (mg/m3) 0.262
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Tasman Sea coastal waters of continental Australia [GAZ:00143737]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.217
hex_fuco_meth meth_2.2
imos_site_code NRSMAI
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -42.5967 148.2333
latitude (decimal_degrees) -42.5967
longitude (decimal_degrees) 148.2333
lut (mg/m3) 1e-10
lut_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
neo (mg/m3) 0.036
neo_meth meth_2.2
nitrate (μmol/L) 0.9
nitrate_meth meth_2.2
nitrite (μmol/L) 0.12
nitrite_meth meth_2.2
nrs_sample_code MAI20201020_0
nrs_trip_code MAI20201020
nucl_acid_ext meth_3.1.9
omics metagenomics
oxygen (μmol/L) 278.6
oxygen_ctd_vol (mL/L) 278.0649
oxygen_ctd_vol_meth meth_2.2
oxygen_meth meth_2.2
perid (mg/m3) 0.033
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 0.25
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 35683.5
picoeukaryotes_meth meth_2.2int
pras (mg/m3) 0.116
pras_meth meth_2.2
prochlorococcus (cells/mL) 462.0
prochlorococcus_meth meth_2.2int
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
salinity (PSU) 35.1607
salinity_lab (PSU) 35.158
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.0_202303211058.db
sample_id 102.100.100/141139
sample_id_description Bioplatforms Australia
sample_metadata_ingest_date 2022-11-29_00:00:00
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Maria Island
sample_submission_date 2022-08-11
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 10.0
secchi_depth_meth meth_2.2
silicate (μmol/L) 0.5
silicate_meth meth_2.2
source_mat_id 102.100.100/141139
store_cond meth_1.4
synechococcus (cells/mL) 9044.5
synechococcus_meth meth_2.2int
system_used CSIRO HPC
temp (degC) 12.6755
temp_meth meth_2.2
ticket BPAOPS-1313
total_co2 (μmol/kg) 2090.82
total_co2_meth meth_2.2
tss (mg/L) 0.4
tss_meth meth_2.2int
turbidity (NTU) 0.8181
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/141139
utc_date_sampled 2020-10-20
utc_time_sampled 23:10:00
viola (mg/m3) 0.049
viola_meth meth_2.2
zea (mg/m3) 0.017
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 22.4863
zooplankton_biomass_meth meth_2.2int