Australian Microbiome Metagenomics Analysed 102.100.100/21649

Maria Island, MGSD

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Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
Access Control Date 2022-11-09
Access Control Mode date
Sequence Data Type metagenomics-analysed
Related Data doi:10.25953/z3tc-a185
absorbance_260_280_ratio_submitter 1.93
absorbance_260_280_ratio_submitter_meth meth_3.3.1
alkalinity (μmol/kg) 2325.89
alkalinity_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.1
ammonium_meth meth_2.2
analysis_date 2022-08-10
analysis_method https://github.com/AusMicrobiome/metagenome
analysis_name 21649_MGSD_CSIRO
analysis_qc QC report included
archive_ingestion_date 2022-08-19
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-analysed/BPAOPS-1314/MAI_MGSD_2/
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Marine Microbes Project (MM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
collection_date 2014-02-04
computational_infrastructure CSIRO
data_context Metagenomics
data_generated 2022-08-19
data_type MGSD
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.0.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
dataset_id_description Bioplatforms Australia
date_of_transfer 2022-08-11
depth (m) 0.0
depth_lower (m) 0.0
depth_upper (m) 0.0
description Metagenome Analysed
dna_concentration_submitter (ng/μL) 5.602
dna_concentration_submitter_meth meth_3.3.1
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
folder MAI_MGSD_2
folder_name MAI_MGSD_2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Tasman Sea coastal waters of continental Australia [GAZ:00143737]
imos_site_code NRSMAI
lat_lon (decimal_degrees) -42.5967 148.2333
latitude (decimal_degrees) -42.5967
longitude (decimal_degrees) 148.2333
ncbi_bioproject_accession_number PRJNA385736
ncbi_biosample_accession_number SAMN07483525
nitrate (μmol/L) 0.1
nitrate_meth meth_2.2
nrs_sample_code MAI20140205_0
nrs_trip_code MAI20140205
nucl_acid_ext meth_3.1.9
omics metagenomics
oxygen (μmol/L) 254.1
oxygen_meth meth_2.2
phosphate (μmol/L) 0.13
phosphate_meth meth_2.2
picoeukaryotes (cells/mL) 6279.0
picoeukaryotes_meth meth_2.2int
prochlorococcus (cells/mL) 935.0
prochlorococcus_meth meth_2.2int
salinity_lab (PSU) 35.285
salinity_lab_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.0_202303211058.db
sample_id 102.100.100/21649
sample_id_description Bioplatforms Australia
sample_metadata_ingest_date 2022-11-29_00:00:00
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Maria Island
sample_submission_date 2022-08-11
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
sample_volume_notes Other - not recorded in field log sheets [assume 2 L as per protocol]
secchi_depth (m) 17.0
secchi_depth_meth meth_2.2
silicate (μmol/L) 0.5
silicate_meth meth_2.2
source_mat_id 102.100.100/21649
store_cond meth_1.4
synechococcus (cells/mL) 48878.0
synechococcus_meth meth_2.2int
system_used CSIRO HPC
ticket BPAOPS-1314
total_co2 (μmol/kg) 2067.02
total_co2_meth meth_2.2
tss (mg/L) 0.5
tss_meth meth_2.2int
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/21649
utc_date_sampled 2014-02-04
utc_time_sampled 13:00:00
zooplankton_biomass (mg/m3) 21.8655
zooplankton_biomass_meth meth_2.2int