Australian Microbiome Metagenomics Analysed 102.100.100/21651

Maria Island, MGSD

Dataset size is: 0.00 Bit

Log in or Register to access resource
 
 

 

Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
Access Control Date 2022-11-09
Access Control Mode date
Sequence Data Type metagenomics-analysed
Related Data doi:10.25953/z3tc-a185
absorbance_260_280_ratio_submitter 1.83
absorbance_260_280_ratio_submitter_meth meth_3.3.1
alkalinity (μmol/kg) 2332.21
alkalinity_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.04
ammonium_meth meth_2.2
analysis_date 2022-08-10
analysis_method https://github.com/AusMicrobiome/metagenome
analysis_name 21651_MGSD_CSIRO
analysis_qc QC report included
archive_ingestion_date 2022-08-19
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-analysed/BPAOPS-1315/MAI_MGSD_3/
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Marine Microbes Project (MM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
chlorophyll_ctd (mg/m3) 0.3945
chlorophyll_ctd_meth meth_2.2
collection_date 2014-04-08
computational_infrastructure CSIRO
conductivity_aqueous (S/m) 4.5961
conductivity_aqueous_meth meth_2.2
data_context Metagenomics
data_generated 2022-08-19
data_type MGSD
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.0.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
dataset_id_description Bioplatforms Australia
date_of_transfer 2022-08-11
density (kg/m3) 1025.7737
density_meth meth_2.2
depth (m) 0.0
depth_lower (m) 0.0
depth_upper (m) 0.0
description Metagenome Analysed
dna_concentration_submitter (ng/μL) 5.35
dna_concentration_submitter_meth meth_3.3.1
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
folder MAI_MGSD_3
folder_name MAI_MGSD_3
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Tasman Sea coastal waters of continental Australia [GAZ:00143737]
imos_site_code NRSMAI
lat_lon (decimal_degrees) -42.5967 148.2333
latitude (decimal_degrees) -42.5967
longitude (decimal_degrees) 148.2333
ncbi_bioproject_accession_number PRJNA385736
ncbi_biosample_accession_number SAMN07483527
nitrate (μmol/L) 0.5
nitrate_meth meth_2.2
nrs_sample_code MAI20140408_0
nrs_trip_code MAI20140408
nucl_acid_ext meth_3.1.9
omics metagenomics
oxygen (μmol/L) 243.1
oxygen_ctd_vol (mL/L) 240.9646
oxygen_ctd_vol_meth meth_2.2
oxygen_meth meth_2.2
phosphate (μmol/L) 0.13
phosphate_meth meth_2.2
picoeukaryotes (cells/mL) 4069.0
picoeukaryotes_meth meth_2.2int
prochlorococcus (cells/mL) 40850.5
prochlorococcus_meth meth_2.2int
salinity (PSU) 35.4888
salinity_lab (PSU) 35.482
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.0_202303211058.db
sample_id 102.100.100/21651
sample_id_description Bioplatforms Australia
sample_metadata_ingest_date 2022-11-29_00:00:00
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Maria Island
sample_submission_date 2022-08-11
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
sample_volume_notes Other - not recorded in field log sheets [assume 2 L as per protocol]
secchi_depth (m) 15.0
secchi_depth_meth meth_2.2
silicate (μmol/L) 0.6
silicate_meth meth_2.2
source_mat_id 102.100.100/21651
store_cond meth_1.4
synechococcus (cells/mL) 61336.0
synechococcus_meth meth_2.2int
system_used CSIRO HPC
temp (degC) 17.4981
temp_meth meth_2.2
ticket BPAOPS-1315
total_co2 (μmol/kg) 2065.32
total_co2_meth meth_2.2
tss (mg/L) 0.6
tss_meth meth_2.2int
turbidity (NTU) 0.2777
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/21651
utc_date_sampled 2014-04-08
utc_time_sampled 01:03:00
zooplankton_biomass (mg/m3) 4.6845
zooplankton_biomass_meth meth_2.2int