Australian Microbiome Metagenomics Novaseq 102.100.100/139607
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2022-08-24 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| Related Data | doi:10.25953/gc1p-cr94 |
| absorbance_260_230_ratio | 0.087 |
| absorbance_260_280_ratio | 0.588 |
| am_environment | Soil |
| archive_ingestion_date | 2022-05-27 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-novaseq/ramaciotti/BPAOPS-1268/20220520_MGE_UNSW_HJWT7DSX3/ |
| bioplatforms_dataset_id | 102.100.100/401935 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM0019 |
| conversion_software | bcl2fastq |
| conversion_software_version | v2.20 |
| data_generated | 2022-05-27 |
| data_type | MGE |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.0.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401935 |
| date_of_transfer | 2022-05-26 |
| description | NovaSeq data package |
| dna_concentration | 0.9 |
| dna_concentration_method | picogreen |
| dna_concentration_submitter (ng/μL) | 1.23 |
| facility_code | ramaciotti |
| flowcell | HJWT7DSX3 |
| folder_name | 20220520_MGE_UNSW_HJWT7DSX3 |
| funding_agency | AMI |
| insert_size_range | 350-500 |
| library_construction_protocol | Illumina DNA Prep |
| nucl_acid_ext | meth_3.1.10 |
| number_of_raw_reads | 42748860.0 |
| number_pcr_cycle | 12.0 |
| omics | metagenomics |
| sample_attribution | E. Watkin |
| sample_database_file | AM_db_v4.0_202303211058.db |
| sample_id | 102.100.100/139607 |
| sample_metadata_ingest_date | 2021-04-23_00:00:00 |
| sample_metadata_ingest_file | BOASE_Version2_AM_ContextualMetadata_AM0019_Watkin_SOIL_xlsx |
| sample_metadata_update_history | AM_add_meth_for_ALL_DB_UPDATE_xlsx; |
| sample_submission_date | 2022-05-26 |
| sample_submitter | Katelyn Boase |
| sequencer | NovaSeq 6000 |
| source_mat_id | 102.100.100/139607 |
| ticket | BPAOPS-1268 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/139607 |