Australian Microbiome Metagenomics Novaseq 102.100.100/34369

GO-SHIPS Station number/rosette position 0236, MGE

Dataset size is: 6.54 GiB

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2020-08-02
Access Control Mode date
Sequence Data Type illumina-shortread
alkalinity (μmol/kg) 2303.6
allo (mg/m3) 0.0
am_environment Marine
ammonium (μmol/L) 0.513
archive_ingestion_date 2020-05-07
asta (mg/m3) 0.0
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-novaseq/ramaciotti/BPAOPS-899/
bioplatforms_project Marine Microbes Project (MM)
biotic_relationship Free-living
but_fuco (mg/m3) 0.025392263
chlorophyll_c1 (mg/m3) 0.00889637
chlorophyll_c2 (mg/m3) 0.050713246
chlorophyll_c3 (mg/m3) 0.041420402
chlorophyll_ctd (mg/m3) 0.5
collection_date 2016-05-04
conversion_software bcl2fastq2
conversion_software_version v2.20
cphlide_a (mg/m3) 0.0
data_generated 2020-05-07
data_type MGE
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.0.0/db_schema_definitions/db_schema_definitions.xlsx
date_of_transfer 2020-05-04
depth (m) 5.8
depth_lower (m) 5.8
depth_upper (m) 5.8
description NovaSeq data package
diadino (mg/m3) 0.010096681
diato (mg/m3) 0.0
dv_cphl_a (mg/m3) 0.0
dv_cphl_b (mg/m3) 0.0
env_medium Sea water [ENVO_00002149]
facility_code ramaciotti
flowcell HYTFVDSXX
folder_name 20200504_AM_MGE_UNSW_HYTFVDSXX
fuco (mg/m3) 0.109967066
geo_loc_name Pacific Ocean
hex_fuco (mg/m3) 0.023192191
insert_size_range 150-1500
lat_lon (decimal_degrees) -66.33315 -169.99998
latitude (decimal_degrees) -66.33315
library_construction_protocol Nextera DNA Flex
longitude (decimal_degrees) -169.99998
lut (mg/m3) 0.0
neo (mg/m3) 0.0
nitrate_nitrite (μmol/L) 28.4
nitrite (μmol/L) 0.22
number_of_raw_reads 47894447.0
omics metagenomics
oxygen (μmol/L) 345.6
oxygen_ctd_wt (μmol/kg) 355.4
perid (mg/m3) 0.0
phide_a (mg/m3) 0.0
phosphate (μmol/L) 1.98
pras (mg/m3) 0.0
pres_rel (dbar) 5.8
salinity (PSU) 34.071
salinity_lab (PSU) 34.0868
sample_database_file AM_db_v4.0_202303211058.db
sample_id 102.100.100/34369
sample_metadata_ingest_date 2021-04-23_00:00:00
sample_metadata_ingest_file MM_curated_metadata_UTC_Upper_lower_depth_Amm_bad_sampleCurated_NRS_removed_Chl_merge_xlsx
sample_metadata_update_history free_living_biotic_relationship_UPDATE_xlsx;
sample_site_location_description GO-SHIPS Station number/rosette position 0236
sample_submission_date 2020-05-04
sample_type Pelagic
sequencer NovaSeq 6000
silicate (μmol/L) 63.77
source_mat_id 102.100.100/34369
temp (degC) -1.504
ticket BPAOPS-899
tot_depth_water_col (m) 3308.0
total_co2 (μmol/kg) 2195.3
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/34369
utc_date_sampled 2016-05-04
utc_time_sampled 11:40:51
viola (mg/m3) 0.0
voyage_code IN2016_v03
zea (mg/m3) 0.0