Australian Microbiome Metagenomics Novaseq 102.100.100/34393

3136, MGE

Dataset size is: 5.09 GiB

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2020-08-02
Access Control Mode date
Sequence Data Type illumina-shortread
alkalinity (μmol/kg) 2280.7
allo (mg/m3) 0.002297778
am_environment Marine
ammonium (μmol/L) 0.189
archive_ingestion_date 2020-05-07
asta (mg/m3) 0.0
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-novaseq/ramaciotti/BPAOPS-899/
bioplatforms_project Marine Microbes Project (MM)
biotic_relationship Free-living
but_fuco (mg/m3) 0.035984705
chlorophyll_c1 (mg/m3) 0.008345986
chlorophyll_c2 (mg/m3) 0.032772862
chlorophyll_c3 (mg/m3) 0.033137831
chlorophyll_ctd (mg/m3) 0.34
collection_date 2016-05-17
conversion_software bcl2fastq2
conversion_software_version v2.20
cphlide_a (mg/m3) 0.0
data_generated 2020-05-07
data_type MGE
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.0.0/db_schema_definitions/db_schema_definitions.xlsx
date_of_transfer 2020-05-04
depth (m) 5.2
depth_lower (m) 5.2
depth_upper (m) 5.2
description NovaSeq data package
diadino (mg/m3) 0.010898038
diato (mg/m3) 0.0
dv_cphl_a (mg/m3) 0.0
dv_cphl_b (mg/m3) 0.0
env_medium Sea water [ENVO_00002149]
facility_code ramaciotti
flowcell HYTFVDSXX
folder_name 20200504_AM_MGE_UNSW_HYTFVDSXX
fuco (mg/m3) 0.014339902
geo_loc_name Pacific Ocean
hex_fuco (mg/m3) 0.097057368
insert_size_range 150-1500
lat_lon (decimal_degrees) -52.0028 -170.0688
latitude (decimal_degrees) -52.0028
library_construction_protocol Nextera DNA Flex
longitude (decimal_degrees) -170.0688
lut (mg/m3) 0.001805826
neo (mg/m3) 0.006801723
nitrate_nitrite (μmol/L) 15.12
nitrite (μmol/L) 0.27
number_of_raw_reads 34607436.0
omics metagenomics
oxygen (μmol/L) 283.5
oxygen_ctd_wt (μmol/kg) 283.8
perid (mg/m3) 0.00711451
phide_a (mg/m3) 0.0
phosphate (μmol/L) 1.13
pras (mg/m3) 0.008423187
pres_rel (dbar) 5.2
salinity (PSU) 34.274
salinity_lab (PSU) 34.274
sample_database_file AM_db_v4.0_202303211058.db
sample_id 102.100.100/34393
sample_metadata_ingest_date 2021-04-23_00:00:00
sample_metadata_ingest_file MM_curated_metadata_UTC_Upper_lower_depth_Amm_bad_sampleCurated_NRS_removed_Chl_merge_xlsx
sample_metadata_update_history free_living_biotic_relationship_UPDATE_xlsx;
sample_site_location_description 3136
sample_submission_date 2020-05-04
sample_type Pelagic
sequencer NovaSeq 6000
silicate (μmol/L) 2.77
source_mat_id 102.100.100/34393
temp (degC) 8.046
ticket BPAOPS-899
tot_depth_water_col (m) 4867.0
total_co2 (μmol/kg) 2110.4
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/34393
utc_date_sampled 2016-05-17
utc_time_sampled 11:43:12
viola (mg/m3) 0.0052359
voyage_code IN2016_v03
zea (mg/m3) 0.003760161