Australian Microbiome Metagenomics Novaseq 102.100.100/34430

6936, MGE

Dataset size is: 5.47 GiB

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2020-08-02
Access Control Mode date
Sequence Data Type illumina-shortread
alkalinity (μmol/kg) 2330.8
allo (mg/m3) 0.0
am_environment Marine
ammonium (μmol/L) 0.004
archive_ingestion_date 2020-05-07
asta (mg/m3) 0.0
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-novaseq/ramaciotti/BPAOPS-899/
bioplatforms_project Marine Microbes Project (MM)
biotic_relationship Free-living
but_fuco (mg/m3) 0.010709042
chlorophyll_c1 (mg/m3) 0.004052147
chlorophyll_c2 (mg/m3) 0.005968028
chlorophyll_c3 (mg/m3) 0.006154699
chlorophyll_ctd (mg/m3) 0.3
collection_date 2016-06-02
conversion_software bcl2fastq2
conversion_software_version v2.20
cphlide_a (mg/m3) 0.0
data_generated 2020-05-07
data_type MGE
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.0.0/db_schema_definitions/db_schema_definitions.xlsx
date_of_transfer 2020-05-04
depth (m) 6.1
depth_lower (m) 6.1
depth_upper (m) 6.1
description NovaSeq data package
diadino (mg/m3) 0.002970325
diato (mg/m3) 0.0
dv_cphl_a (mg/m3) 0.044618582
dv_cphl_b (mg/m3) 0.003369667
env_medium Sea water [ENVO_00002149]
facility_code ramaciotti
flowcell HYTFVDSXX
folder_name 20200504_AM_MGE_UNSW_HYTFVDSXX
fuco (mg/m3) 0.00293138
geo_loc_name Pacific Ocean
hex_fuco (mg/m3) 0.016422418
insert_size_range 150-1500
lat_lon (decimal_degrees) -35.01347 -169.99127
latitude (decimal_degrees) -35.01347
library_construction_protocol Nextera DNA Flex
longitude (decimal_degrees) -169.99127
lut (mg/m3) 0.0
neo (mg/m3) 0.0
nitrate_nitrite (μmol/L) 0.03
nitrite (μmol/L) 0.0
number_of_raw_reads 39497098.0
omics metagenomics
oxygen (μmol/L) 232.7
oxygen_ctd_wt (μmol/kg) 233.7
perid (mg/m3) 0.0
phide_a (mg/m3) 0.0
phosphate (μmol/L) 0.09
pras (mg/m3) 0.0
pres_rel (dbar) 6.1
salinity (PSU) 35.496
salinity_lab (PSU) 35.4966
sample_database_file AM_db_v4.0_202303211058.db
sample_id 102.100.100/34430
sample_metadata_ingest_date 2021-04-23_00:00:00
sample_metadata_ingest_file MM_curated_metadata_UTC_Upper_lower_depth_Amm_bad_sampleCurated_NRS_removed_Chl_merge_xlsx
sample_metadata_update_history free_living_biotic_relationship_UPDATE_xlsx;
sample_site_location_description 6936
sample_submission_date 2020-05-04
sample_type Pelagic
sequencer NovaSeq 6000
silicate (μmol/L) -0.07
source_mat_id 102.100.100/34430
temp (degC) 18.215
ticket BPAOPS-899
tot_depth_water_col (m) 5264.0
total_co2 (μmol/kg) 2064.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/34430
utc_date_sampled 2016-06-02
utc_time_sampled 21:00:24
viola (mg/m3) 0.0
voyage_code IN2016_v03
zea (mg/m3) 0.032750017