Australian Microbiome Metagenomics Novaseq 102.100.100/34569
Dataset size is: 6.54 GiB
Data and Resources
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34569_MGE_HYTFVDSXX_TCTCAATACC-G... Metadata Only FASTQ
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34569_MGE_HYTFVDSXX_TCTCAATACC-G... Metadata Only FASTQ
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34569_MGE_HYTFVDSXX_TCTCAATACC-G... Metadata Only FASTQ
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34569_MGE_HYTFVDSXX_TCTCAATACC-G... Metadata Only FASTQ
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34569_MGE_HYTFVDSXX_TCTCAATACC-G... Metadata Only FASTQ
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34569_MGE_HYTFVDSXX_TCTCAATACC-G... Metadata Only FASTQ
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34569_MGE_HYTFVDSXX_TCTCAATACC-G... Metadata Only FASTQ
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34569_MGE_HYTFVDSXX_TCTCAATACC-G... Metadata Only FASTQ
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AM_MGE_UNSW_HYTFVDSXX_checksums.md5 Metadata Only MD5
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2020-08-02 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| alkalinity (μmol/kg) | 2320.1 |
| am_environment | Marine |
| ammonium (μmol/L) | 0.028 |
| archive_ingestion_date | 2020-05-07 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-novaseq/ramaciotti/BPAOPS-899/ |
| bioplatforms_project | Marine Microbes Project (MM) |
| biotic_relationship | Free-living |
| collection_date | 2016-05-30 |
| conversion_software | bcl2fastq2 |
| conversion_software_version | v2.20 |
| data_generated | 2020-05-07 |
| data_type | MGE |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.0.0/db_schema_definitions/db_schema_definitions.xlsx |
| date_of_transfer | 2020-05-04 |
| depth (m) | 83.4 |
| depth_lower (m) | 83.4 |
| depth_upper (m) | 83.4 |
| description | NovaSeq data package |
| env_medium | Sea water [ENVO_00002149] |
| facility_code | ramaciotti |
| flowcell | HYTFVDSXX |
| folder_name | 20200504_AM_MGE_UNSW_HYTFVDSXX |
| geo_loc_name | Pacific Ocean |
| insert_size_range | 150-1500 |
| lat_lon (decimal_degrees) | -39.07282 -172.11525 |
| latitude (decimal_degrees) | -39.07282 |
| library_construction_protocol | Nextera DNA Flex |
| longitude (decimal_degrees) | -172.11525 |
| nitrate_nitrite (μmol/L) | 0.04 |
| nitrite (μmol/L) | 0.01 |
| number_of_raw_reads | 50184173.0 |
| omics | metagenomics |
| oxygen (μmol/L) | 238.2 |
| oxygen_ctd_wt (μmol/kg) | 236.0 |
| phosphate (μmol/L) | 0.12 |
| pres_rel (dbar) | 83.4 |
| salinity (PSU) | 35.281 |
| salinity_lab (PSU) | 35.2756 |
| sample_database_file | AM_db_v4.0_202303211058.db |
| sample_id | 102.100.100/34569 |
| sample_metadata_ingest_date | 2021-04-23_00:00:00 |
| sample_metadata_ingest_file | MM_curated_metadata_UTC_Upper_lower_depth_Amm_bad_sampleCurated_NRS_removed_Chl_merge_xlsx |
| sample_metadata_update_history | free_living_biotic_relationship_UPDATE_xlsx; |
| sample_site_location_description | 5933 |
| sample_submission_date | 2020-05-04 |
| sample_type | Pelagic |
| sequencer | NovaSeq 6000 |
| silicate (μmol/L) | 0.23 |
| source_mat_id | 102.100.100/34569 |
| temp (degC) | 16.673 |
| ticket | BPAOPS-899 |
| tot_depth_water_col (m) | 4865.0 |
| total_co2 (μmol/kg) | 2068.3 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/34569 |
| utc_date_sampled | 2016-05-30 |
| utc_time_sampled | 00:27:17 |
| voyage_code | IN2016_v03 |