Australian Microbiome Metagenomics Novaseq 102.100.100/37069

4025, MGE

Dataset size is: 5.27 GiB

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

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Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2020-08-02
Access Control Mode date
Sequence Data Type illumina-shortread
am_environment Marine
archive_ingestion_date 2020-05-07
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-novaseq/ramaciotti/BPAOPS-899/
bioplatforms_project Marine Microbes Project (MM)
biotic_relationship Free-living
collection_date 2016-05-19
conversion_software bcl2fastq2
conversion_software_version v2.20
data_generated 2020-05-07
data_type MGE
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.0.0/db_schema_definitions/db_schema_definitions.xlsx
date_of_transfer 2020-05-04
depth (m) 500.1
depth_lower (m) 500.1
depth_upper (m) 500.1
description NovaSeq data package
env_medium Sea water [ENVO_00002149]
facility_code ramaciotti
flowcell HYTFVDSXX
folder_name 20200504_AM_MGE_UNSW_HYTFVDSXX
geo_loc_name Pacific Ocean
insert_size_range 150-1500
lat_lon (decimal_degrees) -47.499267 -169.989033
latitude (decimal_degrees) -47.499267
library_construction_protocol Nextera DNA Flex
longitude (decimal_degrees) -169.989033
ncbi_bioproject_accession_number PRJNA385736
ncbi_biosample_accession_number SAMN08218866
nitrate_nitrite (μmol/L) 19.21
nitrite (μmol/L) 0.01
number_of_raw_reads 36199660.0
omics metagenomics
oxygen (μmol/L) 257.3
oxygen_ctd_wt (μmol/kg) 254.3
phosphate (μmol/L) 1.34
pres_rel (dbar) 500.1
salinity (PSU) 34.433
salinity_lab (PSU) 34.4234
sample_database_file AM_db_v4.0_202303211058.db
sample_id 102.100.100/37069
sample_metadata_ingest_date 2021-04-23_00:00:00
sample_metadata_ingest_file MM_curated_metadata_UTC_Upper_lower_depth_Amm_bad_sampleCurated_NRS_removed_Chl_merge_xlsx
sample_metadata_update_history free_living_biotic_relationship_UPDATE_xlsx;
sample_site_location_description 4025
sample_submission_date 2020-05-04
sample_submitter Jodie van de Kamp
sample_type Pelagic
sequencer NovaSeq 6000
silicate (μmol/L) 5.86
source_mat_id 102.100.100/37069
temp (degC) 7.697
ticket BPAOPS-899
tot_depth_water_col (m) 5354.0
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/37069
utc_date_sampled 2016-05-19
utc_time_sampled 23:41:00
voyage_code IN2016_v03