Australian Microbiome Metagenomics Novaseq 102.100.100/37358
Dataset size is: 4.61 GiB
Data and Resources
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37358_MGE_HYTFVDSXX_CAACGTTCGG-G... Metadata Only FASTQ
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37358_MGE_HYTFVDSXX_CAACGTTCGG-G... Metadata Only FASTQ
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37358_MGE_HYTFVDSXX_CAACGTTCGG-G... Metadata Only FASTQ
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37358_MGE_HYTFVDSXX_CAACGTTCGG-G... Metadata Only FASTQ
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37358_MGE_HYTFVDSXX_CAACGTTCGG-G... Metadata Only FASTQ
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AM_MGE_UNSW_HYTFVDSXX_checksums.md5 Metadata Only MD5
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37358_MGE_HYTFVDSXX_CAACGTTCGG-G... Metadata Only FASTQ
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37358_MGE_HYTFVDSXX_CAACGTTCGG-G... Metadata Only FASTQ
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37358_MGE_HYTFVDSXX_CAACGTTCGG-G... Metadata Only FASTQ
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2020-08-02 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| alkalinity (μmol/kg) | 2336.6 |
| am_environment | Marine |
| archive_ingestion_date | 2020-05-07 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-novaseq/ramaciotti/BPAOPS-899/ |
| bioplatforms_project | Marine Microbes Project (MM) |
| biotic_relationship | Free-living |
| chlorophyll_ctd (mg/m3) | 0.11 |
| collection_date | 2016-06-10 |
| conversion_software | bcl2fastq2 |
| conversion_software_version | v2.20 |
| data_generated | 2020-05-07 |
| data_type | MGE |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.0.0/db_schema_definitions/db_schema_definitions.xlsx |
| date_of_transfer | 2020-05-04 |
| depth (m) | 151.7 |
| depth_lower (m) | 151.7 |
| depth_upper (m) | 151.7 |
| description | NovaSeq data package |
| env_medium | Sea water [ENVO_00002149] |
| facility_code | ramaciotti |
| flowcell | HYTFVDSXX |
| folder_name | 20200504_AM_MGE_UNSW_HYTFVDSXX |
| geo_loc_name | Pacific Ocean |
| insert_size_range | 150-1500 |
| lat_lon (decimal_degrees) | -23.99563 -170.00355 |
| latitude (decimal_degrees) | -23.99563 |
| library_construction_protocol | Nextera DNA Flex |
| longitude (decimal_degrees) | -170.00355 |
| ncbi_bioproject_accession_number | PRJNA385736 |
| ncbi_biosample_accession_number | SAMN08219154 |
| nitrate_nitrite (μmol/L) | 1.93 |
| nitrite (μmol/L) | 0.02 |
| number_of_raw_reads | 35506705.0 |
| omics | metagenomics |
| oxygen (μmol/L) | 201.9 |
| oxygen_ctd_wt (μmol/kg) | 203.2 |
| phosphate (μmol/L) | 0.22 |
| pres_rel (dbar) | 151.7 |
| salinity (PSU) | 35.651 |
| salinity_lab (PSU) | 35.6441 |
| sample_database_file | AM_db_v4.0_202303211058.db |
| sample_id | 102.100.100/37358 |
| sample_metadata_ingest_date | 2021-04-23_00:00:00 |
| sample_metadata_ingest_file | MM_curated_metadata_UTC_Upper_lower_depth_Amm_bad_sampleCurated_NRS_removed_Chl_merge_xlsx |
| sample_metadata_update_history | free_living_biotic_relationship_UPDATE_xlsx; |
| sample_site_location_description | 9031 |
| sample_submission_date | 2020-05-04 |
| sample_submitter | Jodie van de Kamp |
| sample_type | Pelagic |
| sequencer | NovaSeq 6000 |
| silicate (μmol/L) | 0.53 |
| source_mat_id | 102.100.100/37358 |
| temp (degC) | 19.271 |
| ticket | BPAOPS-899 |
| tot_depth_water_col (m) | 5689.0 |
| total_co2 (μmol/kg) | 2070.3 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/37358 |
| utc_date_sampled | 2016-06-10 |
| utc_time_sampled | 13:49:59 |
| voyage_code | IN2016_v03 |