Australian Microbiome Metagenomics Novaseq 102.100.100/400773

Port Hacking, MGE

Dataset size is: 0.00 Bit

Log in or Register to access resource
 
 

 

Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2022-07-05
Access Control Mode date
Sequence Data Type illumina-shortread
Related Data doi:10.25953/z3tc-a185
absorbance_260_230_ratio 0.072
absorbance_260_280_ratio 1.855
alkalinity (μmol/kg) 2327.26
alkalinity_meth meth_2.2
allo (mg/m3) 0.024
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.032
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.26
ammonium_meth meth_2.2
anth (mg/m3) 1e-10
anth_meth meth_2.2
archive_ingestion_date 2022-04-08
asta (mg/m3) 0.004
asta_meth meth_2.2
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-novaseq/ramaciotti/BPAOPS-1216/20220401_MGE_UNSW_HKJWLDSX3/
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
but_fuco (mg/m3) 0.058
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
chlorophyll_a (mg/m3) 0.829
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.17
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.153
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.132
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 0.4927
chlorophyll_ctd_meth meth_2.2
collection_date 2021-04-21
conductivity_aqueous (S/m) 4.9808
conductivity_aqueous_meth meth_2.2
conversion_software bcl2fastq
conversion_software_version v2.20
cphlide_a (mg/m3) 0.099
cphlide_a_meth meth_2.2
data_generated 2022-04-08
data_type MGE
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.0.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
date_of_transfer 2022-04-06
density (kg/m3) 1024.7966
density_meth meth_2.2
depth (m) 0.0
depth_lower (m) 0.0
depth_upper (m) 0.0
description NovaSeq data package
diadino (mg/m3) 0.03
diadino_meth meth_2.2
diato (mg/m3) 1e-10
diato_meth meth_2.2
dino (mg/m3) 1e-10
dino_meth meth_2.2
dna_concentration 9.42
dna_concentration_method Qubit
dv_cphl_a (mg/m3) 1e-10
dv_cphl_a_and_cphl_a (mg/m3) 0.829
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.17
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
facility_code ramaciotti
flowcell HKJWLDSX3
folder_name 20220401_MGE_UNSW_HKJWLDSX3
fuco (mg/m3) 0.174
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:East Australian Current [GAZ:00000352]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.16
hex_fuco_meth meth_2.2
imos_site_code NRSPHB
insert_size_range 350-500
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -34.1192 151.2267
latitude (decimal_degrees) -34.1192
library_construction_protocol Illumina DNA Prep
longitude (decimal_degrees) 151.2267
lut (mg/m3) 1e-10
lut_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
neo (mg/m3) 0.015
neo_meth meth_2.2
nitrate (μmol/L) 0.6
nitrate_meth meth_2.2
nitrite (μmol/L) 0.11
nitrite_meth meth_2.2
nrs_sample_code PHB20210421_0
nrs_trip_code PHB20210421
nucl_acid_ext meth_3.1.9
number_of_raw_reads 62910968.0
number_pcr_cycle 8.0
omics metagenomics
oxygen_ctd_vol (mL/L) 201.3884
oxygen_ctd_vol_meth meth_2.2
perid (mg/m3) 0.016
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 0.14
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 20204.5
picoeukaryotes_meth meth_2.2
pras (mg/m3) 0.041
pras_meth meth_2.2
prochlorococcus (cells/mL) 2458.0
prochlorococcus_meth meth_2.2
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
salinity (PSU) 35.4802
salinity_lab (PSU) 35.482
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.0_202303211058.db
sample_id 102.100.100/400773
sample_metadata_ingest_date 2022-11-29_00:00:00
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Port Hacking
sample_submission_date 2022-04-06
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
sample_volume_notes Other - not recorded in field log sheets [assume 2 L as per protocol]
secchi_depth (m) 11.0
secchi_depth_meth meth_2.2
sequencer NovaSeq 6000
silicate (μmol/L) 1.0
silicate_meth meth_2.2
source_mat_id 102.100.100/400773
store_cond meth_1.4
synechococcus (cells/mL) 22567.0
synechococcus_meth meth_2.2
temp (degC) 21.2633
temp_meth meth_2.2
ticket BPAOPS-1216
total_co2 (μmol/kg) 2034.55
total_co2_meth meth_2.2
tss (mg/L) 0.4
tss_meth meth_2.2
turbidity (NTU) 0.1522
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/400773
utc_date_sampled 2021-04-21
utc_time_sampled 23:18:00
viola (mg/m3) 0.008
viola_meth meth_2.2
zea (mg/m3) 0.028
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 0.7886
zooplankton_biomass_meth meth_2.2int