Australian Microbiome Metagenomics Novaseq 102.100.100/400827

Yongala, MGE

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

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Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2022-12-12
Access Control Mode date
Sequence Data Type illumina-shortread
Related Data doi:10.25953/z3tc-a185
absorbance_260_230_ratio 0.201
absorbance_260_280_ratio 1.885
alkalinity (μmol/kg) 2291.96
alkalinity_meth meth_2.2
allo (mg/m3) 0.001
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.03
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.09
ammonium_meth meth_2.2
anth (mg/m3) 0.002
anth_meth meth_2.2
archive_ingestion_date 2022-09-14
asta (mg/m3) 0.005
asta_meth meth_2.2
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-novaseq/ramaciotti/BPAOPS-1318/20220902_MGE_UNSW_H7KCJDSX5_Q0009190/
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
but_fuco (mg/m3) 0.012
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
chlorophyll_a (mg/m3) 0.311
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.029
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.032
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.022
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 0.1872
chlorophyll_ctd_meth meth_2.2
collection_date 2022-01-23
conductivity_aqueous (S/m) 5.7433
conductivity_aqueous_meth meth_2.2
conversion_software bcl2fastq
conversion_software_version v2.20
cphlide_a (mg/m3) 0.029
cphlide_a_meth meth_2.2
data_generated 2022-09-14
data_type MGE
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.0.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
date_of_transfer 2022-09-13
density (kg/m3) 1022.1013
density_meth meth_2.2
depth (m) 0.0
depth_lower (m) 0.0
depth_upper (m) 0.0
description NovaSeq data package
diadino (mg/m3) 0.014
diadino_meth meth_2.2
diato (mg/m3) 1e-10
diato_meth meth_2.2
dino (mg/m3) 1e-10
dino_meth meth_2.2
dna_concentration 19.5
dna_concentration_method picogreen
dv_cphl_a (mg/m3) 0.045
dv_cphl_a_and_cphl_a (mg/m3) 0.356
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.029
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
facility_code ramaciotti
flowcell H7KCJDSX5
folder_name 20220902_MGE_UNSW_H7KCJDSX5_Q0009190
fuco (mg/m3) 0.033
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Great Barrier Reef Marine Park [GAZ:00049080]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.043
hex_fuco_meth meth_2.2
imos_site_code NRSYON
insert_size_range 350-500
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -19.3085 147.6184
latitude (decimal_degrees) -19.3085
library_construction_protocol Illumina DNA Prep
longitude (decimal_degrees) 147.6184
lut (mg/m3) 1e-10
lut_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
neo (mg/m3) 0.003
neo_meth meth_2.2
nitrate (μmol/L) 1e-10
nitrate_meth meth_2.2
nitrite (μmol/L) 1e-10
nitrite_meth meth_2.2
nrs_sample_code YON20220123_0
nrs_trip_code YON20220123
nucl_acid_ext meth_3.1.9
number_of_raw_reads 67691564.0
number_pcr_cycle 5.0
omics metagenomics
perid (mg/m3) 0.008
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 1e-10
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 1920.0
picoeukaryotes_meth meth_2.2
pras (mg/m3) 0.002
pras_meth meth_2.2
prochlorococcus (cells/mL) 66191.5
prochlorococcus_meth meth_2.2
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
salinity (PSU) 35.0609
salinity_lab (PSU) 35.057
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.0_202303211058.db
sample_id 102.100.100/400827
sample_metadata_ingest_date 2022-11-29_00:00:00
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Yongala
sample_submission_date 2022-09-13
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 11.0
secchi_depth_meth meth_2.2
sequencer NovaSeq 6000
silicate (μmol/L) 1.8
silicate_meth meth_2.2
source_mat_id 102.100.100/400827
store_cond meth_1.4
synechococcus (cells/mL) 75453.5
synechococcus_meth meth_2.2
temp (degC) 29.0506
temp_meth meth_2.2
ticket BPAOPS-1318
total_co2 (μmol/kg) 1977.21
total_co2_meth meth_2.2
tss (mg/L) 1.7
tss_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/400827
utc_date_sampled 2022-01-23
utc_time_sampled 00:18:00
viola (mg/m3) 0.002
viola_meth meth_2.2
zea (mg/m3) 0.079
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 34.3703
zooplankton_biomass_meth meth_2.2int