Australian Microbiome Metagenomics Novaseq 102.100.100/400945

North Stradbroke Island, MGE

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Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2023-10-05
Access Control Mode date
Sequence Data Type illumina-shortread
Related Data doi:10.25953/z3tc-a185
absorbance_260_230_ratio 0.089
absorbance_260_280_ratio 1.99
alkalinity (μmol/kg) 2311.39
alkalinity_meth meth_2.2
allo (mg/m3) 1e-10
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.013
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.07
ammonium_meth meth_2.2
anth (mg/m3) 0.001
anth_meth meth_2.2
archive_ingestion_date 2023-07-11
asta (mg/m3) 1e-10
asta_meth meth_2.2
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-novaseq/ramaciotti/BPAOPS-1434/20230628_AM_MGE_UNSW_HHM2CDSX7/
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
but_fuco (mg/m3) 0.004
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
chlorophyll_a (mg/m3) 0.079
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.004
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.013
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.005
chlorophyll_c3_meth meth_2.2
collection_date 2023-01-15T00:50:00
conversion_software bcl2fastq
conversion_software_version v2.20
cphlide_a (mg/m3) 0.008
cphlide_a_meth meth_2.2
data_generated 2023-07-11
data_type MGE
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
date_of_transfer 2023-07-07
depth (m) 0.0
depth_lower (m) 0.0
depth_upper (m) 0.0
description NovaSeq data package
diadino (mg/m3) 0.003
diadino_meth meth_2.2
diato (mg/m3) 0.001
diato_meth meth_2.2
dino (mg/m3) 1e-10
dino_meth meth_2.2
dna_concentration 3.581
dna_concentration_method picogreen
dv_cphl_a (mg/m3) 0.056
dv_cphl_a_and_cphl_a (mg/m3) 0.135
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 0.002
dv_cphl_b_and_cphl_b (mg/m3) 0.006
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
facility_code ramaciotti
flowcell HHM2CDSX7
folder_name 20230628_AM_MGE_UNSW_HHM2CDSX7
fuco (mg/m3) 0.004
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Moreton Bay Marine Park [GAZ:00088305]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.018
hex_fuco_meth meth_2.2
imos_site_code NRSNSI
insert_size_range 350-500
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -27.345 153.562
latitude (decimal_degrees) -27.345
library_construction_protocol Illumina DNA Prep
longitude (decimal_degrees) 153.562
lut (mg/m3) 1e-10
lut_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
neo (mg/m3) 1e-10
neo_meth meth_2.2
nitrate (μmol/L) 1e-10
nitrate_meth meth_2.2
nitrite (μmol/L) 1e-10
nitrite_meth meth_2.2
nrs_sample_code NSI20230115_0
nrs_trip_code NSI20230115
nucl_acid_ext meth_3.1.9
number_of_raw_reads 38890619.0
number_pcr_cycle 6.0
omics metagenomics
perid (mg/m3) 0.002
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 0.05
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
pras (mg/m3) 1e-10
pras_meth meth_2.2
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
salinity_lab (PSU) 35.286
salinity_lab_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/400945
sample_metadata_ingest_date 2024-02-09 12:24:08
sample_metadata_ingest_file AODN_AM_NRS_202402081638_GOLD_xlsx
sample_site_location_description North Stradbroke Island
sample_submission_date 2023-07-07
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 20.0
secchi_depth_meth meth_2.2
sequencer NovaSeq 6000
silicate (μmol/L) 0.5
silicate_meth meth_2.2
source_mat_id 102.100.100/400945
store_cond meth_1.4
ticket BPAOPS-1434
total_co2 (μmol/kg) 1993.25
total_co2_meth meth_2.2
tss (mg/L) 0.6
tss_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/400945
utc_date_sampled 2023-01-15
utc_time_sampled 00:50:00
viola (mg/m3) 0.001
viola_meth meth_2.2
zea (mg/m3) 0.088
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 7.0212
zooplankton_biomass_meth meth_2.2int