Australian Microbiome Metagenomics Novaseq 102.100.100/400947
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2023-10-05 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| Related Data | doi:10.25953/z3tc-a185 |
| absorbance_260_230_ratio | 0.17 |
| absorbance_260_280_ratio | 1.927 |
| allo (mg/m3) | 1e-10 |
| allo_meth | meth_2.2 |
| alpha_beta_car (mg/m3) | 0.204 |
| alpha_beta_car_meth | meth_2.2 |
| am_environment | Marine |
| ammonium (μmol/L) | 0.12 |
| ammonium_meth | meth_2.2 |
| anth (mg/m3) | 0.009 |
| anth_meth | meth_2.2 |
| archive_ingestion_date | 2023-07-11 |
| asta (mg/m3) | 0.004 |
| asta_meth | meth_2.2 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-novaseq/ramaciotti/BPAOPS-1434/20230628_AM_MGE_UNSW_HHM2CDSX7/ |
| bioplatforms_dataset_id | 102.100.100/401949 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM_NRS |
| biotic_relationship | Free-living |
| but_fuco (mg/m3) | 0.006 |
| but_fuco_meth | meth_2.2 |
| cantha (mg/m3) | 1e-10 |
| cantha_meth | meth_2.2 |
| chlorophyll_a (mg/m3) | 1.717 |
| chlorophyll_a_meth | meth_2.2 |
| chlorophyll_b (mg/m3) | 0.019 |
| chlorophyll_b_meth | meth_2.2 |
| chlorophyll_c1 (mg/m3) | 1e-10 |
| chlorophyll_c1_meth | meth_2.2 |
| chlorophyll_c2 (mg/m3) | 0.028 |
| chlorophyll_c2_meth | meth_2.2 |
| chlorophyll_c3 (mg/m3) | 0.01 |
| chlorophyll_c3_meth | meth_2.2 |
| collection_date | 2023-03-16T00:15:00 |
| conversion_software | bcl2fastq |
| conversion_software_version | v2.20 |
| cphlide_a (mg/m3) | 0.215 |
| cphlide_a_meth | meth_2.2 |
| data_generated | 2023-07-11 |
| data_type | MGE |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401949 |
| date_of_transfer | 2023-07-07 |
| depth (m) | 0.0 |
| depth_lower (m) | 0.0 |
| depth_upper (m) | 0.0 |
| description | NovaSeq data package |
| diadino (mg/m3) | 0.013 |
| diadino_meth | meth_2.2 |
| diato (mg/m3) | 1e-10 |
| diato_meth | meth_2.2 |
| dino (mg/m3) | 1e-10 |
| dino_meth | meth_2.2 |
| dna_concentration | 10.702 |
| dna_concentration_method | picogreen |
| dv_cphl_a (mg/m3) | 1e-10 |
| dv_cphl_a_and_cphl_a (mg/m3) | 1.717 |
| dv_cphl_a_and_cphl_a_meth | meth_2.2 |
| dv_cphl_a_meth | meth_2.2 |
| dv_cphl_b (mg/m3) | 1e-10 |
| dv_cphl_b_and_cphl_b (mg/m3) | 0.019 |
| dv_cphl_b_and_cphl_b_meth | meth_2.2 |
| dv_cphl_b_meth | meth_2.2 |
| echin (mg/m3) | 1e-10 |
| echin_meth | meth_2.2 |
| env_broad_scale | 7 Other |
| env_local_scale | 7.2.1 Open ocean water-conservation |
| env_medium | Sea water [ENVO_00002149] |
| facility_code | ramaciotti |
| flowcell | HHM2CDSX7 |
| folder_name | 20230628_AM_MGE_UNSW_HHM2CDSX7 |
| fuco (mg/m3) | 0.022 |
| fuco_meth | meth_2.2 |
| funding_agency | IMOS|CSIRO |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Moreton Bay Marine Park [GAZ:00088305] |
| gyro (mg/m3) | 1e-10 |
| gyro_meth | meth_2.2 |
| hex_fuco (mg/m3) | 0.022 |
| hex_fuco_meth | meth_2.2 |
| imos_site_code | NRSNSI |
| insert_size_range | 350-500 |
| keto_hex_fuco (mg/m3) | 1e-10 |
| keto_hex_fuco_meth | meth_2.2 |
| lat_lon (decimal_degrees) | -27.345 153.562 |
| latitude (decimal_degrees) | -27.345 |
| library_construction_protocol | Illumina DNA Prep |
| longitude (decimal_degrees) | 153.562 |
| lut (mg/m3) | 1e-10 |
| lut_meth | meth_2.2 |
| mg_dvp (mg/m3) | 1e-10 |
| mg_dvp_meth | meth_2.2 |
| neo (mg/m3) | 0.002 |
| neo_meth | meth_2.2 |
| nitrate (μmol/L) | 1e-10 |
| nitrate_meth | meth_2.2 |
| nitrite (μmol/L) | 1e-10 |
| nitrite_meth | meth_2.2 |
| nrs_sample_code | NSI20230316_0 |
| nrs_trip_code | NSI20230316 |
| nucl_acid_ext | meth_3.1.9 |
| number_of_raw_reads | 42020688.0 |
| number_pcr_cycle | 6.0 |
| omics | metagenomics |
| perid (mg/m3) | 0.013 |
| perid_meth | meth_2.2 |
| phide_a (mg/m3) | 0.056 |
| phide_a_meth | meth_2.2 |
| phosphate (μmol/L) | 0.09 |
| phosphate_meth | meth_2.2 |
| phytin_a (mg/m3) | 0.048 |
| phytin_a_meth | meth_2.2 |
| phytin_b (mg/m3) | 1e-10 |
| phytin_b_meth | meth_2.2 |
| pras (mg/m3) | 0.002 |
| pras_meth | meth_2.2 |
| pyrophide_a (mg/m3) | 1e-10 |
| pyrophide_a_meth | meth_2.2 |
| pyrophytin_a (mg/m3) | 1e-10 |
| pyrophytin_a_meth | meth_2.2 |
| salinity_lab (PSU) | 35.243 |
| salinity_lab_meth | meth_2.2 |
| samp_collect_device | meth_1.4 |
| samp_mat_process | meth_1.4 |
| sample_attribution | IMOS|CSIRO |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/400947 |
| sample_metadata_ingest_date | 2024-02-09 12:24:08 |
| sample_metadata_ingest_file | AODN_AM_NRS_202402081638_GOLD_xlsx |
| sample_site_location_description | North Stradbroke Island |
| sample_submission_date | 2023-07-07 |
| sample_submitter | Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938] |
| sample_type | Pelagic |
| secchi_depth (m) | 20.0 |
| secchi_depth_meth | meth_2.2 |
| sequencer | NovaSeq 6000 |
| silicate (μmol/L) | 0.3 |
| silicate_meth | meth_2.2 |
| source_mat_id | 102.100.100/400947 |
| store_cond | meth_1.4 |
| ticket | BPAOPS-1434 |
| tss (mg/L) | 1.2 |
| tss_meth | meth_2.2 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/400947 |
| utc_date_sampled | 2023-03-16 |
| utc_time_sampled | 00:15:00 |
| viola (mg/m3) | 0.003 |
| viola_meth | meth_2.2 |
| zea (mg/m3) | 0.298 |
| zea_meth | meth_2.2 |
| zooplankton_biomass (mg/m3) | 24.4006 |
| zooplankton_biomass_meth | meth_2.2int |