Australian Microbiome Metagenomics Novaseq 102.100.100/400950

Port Hacking, MGE

Dataset size is: 0.00 Bit

Log in or Register to access resource
 
 

 

Data and Resources

This dataset has no data

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2023-10-05
Access Control Mode date
Sequence Data Type illumina-shortread
Related Data doi:10.25953/z3tc-a185
absorbance_260_230_ratio 0.913
absorbance_260_280_ratio 1.776
alkalinity (μmol/kg) 2328.13
alkalinity_meth meth_2.2
allo (mg/m3) 1e-10
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.003
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 1e-10
ammonium_meth meth_2.2
anth (mg/m3) 1e-10
anth_meth meth_2.2
archive_ingestion_date 2023-07-11
asta (mg/m3) 1e-10
asta_meth meth_2.2
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-novaseq/ramaciotti/BPAOPS-1434/20230628_AM_MGE_UNSW_HHM2CDSX7/
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
but_fuco (mg/m3) 0.009
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
chlorophyll_a (mg/m3) 0.304
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.039
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.055
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.025
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 0.9169
chlorophyll_ctd_meth meth_2.2
collection_date 2022-09-26T21:30:00
conductivity_aqueous (S/m) 4.6726
conductivity_aqueous_meth meth_2.2
conversion_software bcl2fastq
conversion_software_version v2.20
cphlide_a (mg/m3) 0.031
cphlide_a_meth meth_2.2
data_generated 2023-07-11
data_type MGE
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
date_of_transfer 2023-07-07
density (kg/m3) 1025.5667
density_meth meth_2.2
depth (m) 0.0
depth_lower (m) 0.0
depth_upper (m) 0.0
description NovaSeq data package
diadino (mg/m3) 0.014
diadino_meth meth_2.2
diato (mg/m3) 1e-10
diato_meth meth_2.2
dino (mg/m3) 1e-10
dino_meth meth_2.2
dna_concentration 7.594
dna_concentration_method picogreen
dv_cphl_a (mg/m3) 1e-10
dv_cphl_a_and_cphl_a (mg/m3) 0.304
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.039
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
facility_code ramaciotti
flowcell HHM2CDSX7
folder_name 20230628_AM_MGE_UNSW_HHM2CDSX7
fuco (mg/m3) 0.1
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:East Australian Current [GAZ:00000352]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.029
hex_fuco_meth meth_2.2
imos_site_code NRSPHB
insert_size_range 350-500
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -34.1192 151.2267
latitude (decimal_degrees) -34.1192
library_construction_protocol Illumina DNA Prep
longitude (decimal_degrees) 151.2267
lut (mg/m3) 1e-10
lut_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
neo (mg/m3) 0.003
neo_meth meth_2.2
nitrate (μmol/L) 1e-10
nitrate_meth meth_2.2
nitrite (μmol/L) 1e-10
nitrite_meth meth_2.2
nrs_sample_code PHB20220926_0
nrs_trip_code PHB20220926
nucl_acid_ext meth_3.1.9
number_of_raw_reads 43672970.0
number_pcr_cycle 6.0
omics metagenomics
oxygen_ctd_vol (mL/L) 224.1898
oxygen_ctd_vol_meth meth_2.2
perid (mg/m3) 0.006
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 0.09
phosphate_meth meth_2.2
phytin_a (mg/m3) 0.022
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 7460.5
picoeukaryotes_meth meth_2.2
pras (mg/m3) 0.004
pras_meth meth_2.2
prochlorococcus (cells/mL) 5064.5
prochlorococcus_meth meth_2.2
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
salinity (PSU) 35.4661
salinity_lab (PSU) 35.465
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/400950
sample_metadata_ingest_date 2024-02-09 12:24:08
sample_metadata_ingest_file AODN_AM_NRS_202402081638_GOLD_xlsx
sample_site_location_description Port Hacking
sample_submission_date 2023-07-07
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 14.0
secchi_depth_meth meth_2.2
sequencer NovaSeq 6000
silicate (μmol/L) 1e-10
silicate_meth meth_2.2
source_mat_id 102.100.100/400950
store_cond meth_1.4
synechococcus (cells/mL) 1675.0
synechococcus_meth meth_2.2
temp (degC) 18.2776
temp_meth meth_2.2
ticket BPAOPS-1434
total_co2 (μmol/kg) 2038.3
total_co2_meth meth_2.2
tss (mg/L) 0.2
tss_meth meth_2.2
turbidity (NTU) -0.0527
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/400950
utc_date_sampled 2022-09-26
utc_time_sampled 21:30:00
viola (mg/m3) 0.002
viola_meth meth_2.2
zea (mg/m3) 1e-10
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 12.0871
zooplankton_biomass_meth meth_2.2int