Australian Microbiome Metagenomics Novaseq 102.100.100/58464
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2021-06-09 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| absorbance_260_230_ratio | 0.682 |
| absorbance_260_280_ratio | 2.177 |
| alkalinity (μmol/kg) | 2524.78 |
| am_environment | Marine |
| ammonium (μmol/L) | 5.565718721 |
| archive_ingestion_date | 2021-03-12 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-novaseq/ramaciotti/BPAOPS-1045/20210202_AM_MGE_UNSW_HVWCWDSXY/ |
| bioplatforms_project | Marine Microbes Project (MM) |
| biotic_relationship | Free-living |
| chlorophyll_a (mg/m3) | 0.842867757 |
| coastal_id | TP_PL_070616_2 |
| collection_date | 2016-06-07 |
| conductivity_aqueous (S/m) | 30.528 |
| conversion_software | bcl2fastq |
| conversion_software_version | v2.20 |
| data_generated | 2021-03-12 |
| data_type | MGE |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.0.0/db_schema_definitions/db_schema_definitions.xlsx |
| date_of_transfer | 2021-03-11 |
| depth (m) | 1.0 |
| depth_lower (m) | 1.0 |
| depth_upper (m) | 1.0 |
| description | NovaSeq data package |
| dna_concentration | 0.124 |
| dna_concentration_method | Qubit |
| env_broad_scale | 7 Other |
| env_local_scale | 7.1.3 Coastal water-intensive use |
| env_medium | Sea water [ENVO_00002149] |
| facility_code | ramaciotti |
| flowcell | HVWCWDSXY |
| folder_name | 20210202_AM_MGE_UNSW_HVWCWDSXY |
| funding_agency | UTS; CRC food agility |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Botany Bay [GAZ:00002797] |
| insert_size_range | 200-1500 |
| lat_lon (decimal_degrees) | -34.006627 151.190374 |
| latitude (decimal_degrees) | -34.006627 |
| library_construction_protocol | Illumina DNA Prep |
| longitude (decimal_degrees) | 151.190374 |
| number_of_raw_reads | 305724542.0 |
| number_pcr_cycle | 6.0 |
| omics | metagenomics |
| ph | 8.02 |
| phosphate (μmol/L) | 0.269554834 |
| sample_attribution | UTS; CRC food agility |
| sample_database_file | AM_db_v4.0_202303211058.db |
| sample_id | 102.100.100/58464 |
| sample_metadata_ingest_date | 2021-04-23_00:00:00 |
| sample_metadata_ingest_file | MM_curated_metadata_UTC_Upper_lower_depth_Amm_bad_sampleCurated_NRS_removed_Chl_merge_xlsx |
| sample_metadata_update_history | free_living_biotic_relationship_UPDATE_xlsx; Taren_to_Towra_metadata_UPDATE_xlsx; AM_curate_geo_loc_name_UPDATE_xlsx; ;Towra_point_metadata_IV_FullREPLACE_xlsx |
| sample_site_location_description | Towra Point |
| sample_submission_date | 2021-03-11 |
| sample_submitter | Shauna Murray [https://orcid.org/0000-0001-7096-1307] |
| sample_type | Coastal water |
| sequencer | NovaSeq 6000 |
| source_mat_id | 102.100.100/58464 |
| ticket | BPAOPS-1045 |
| total_co2 (μmol/kg) | 2323.128418 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/58464 |
| utc_date_sampled | 2016-06-07 |
| utc_time_sampled | 10:45:00 |