Sepsis Genomics Pacbio 25707

ARP Genomics Pacbio Raw Data: Streptococcus pyogenes HKU419 THY broth Replicate 1

Dataset size is: 2.22 GiB

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Data and Resources

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Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member
analytical_facility Ramaciotti
archive_ingestion_date 2016-05-27
cell_position E01
contact_researcher Mark Walker
contextual_data_submission_date 2016-01-22
culture_collection_date 2012-02-23
culture_collection_id SP850
data_generated True
data_type Main dataset
experimental_replicate 1
experimental_sample_preparation_method Phenol-Chloroform
facility RAMACIOTTI
gram_stain POS
growth_condition_media THY broth
growth_condition_temperature 37.0
growth_condition_time_(h) Overnight growth
growth_media THY broth
host_age NA
host_description NA
host_disease_outcome Scarlet fever
host_dob NA
host_location Hong Kong, China
insert_size_range 15-50Kb
isolation_source Blood culture
key_virulence_genes SpeB +ve; Horizontally acquired virulence and resistance determinants associated with scarlet fever
library_construction_protocol PacBio SMRTbell20kb template prep_blue pippin
omics Genomics
publication_reference Scientific Reports 5: 15877 (2015)
replicate 1
rs_version RS Remote v2.3
sample_id 102.100.100/25707
sample_submission_date 2016-01-20
sequencer PacBioRSII
sequencer_run_id m160305_021852
serovar M1T1 clone
smrt_cell_id c100950162550000001823211206101604
strain_description Isolated from ongoing outbreak (over 150,000 cases in China)
strain_or_isolate HKU419
taxon_or_organism Streptococcus pyogenes
ticket BRLOPS-812
work_order Work order 5