Sepsis Genomics Pacbio 25765

ARP Genomics Pacbio Raw Data: Escherichia coli B36 Luria broth Replicate 1

Dataset size is: 8.20 GiB

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Data and Resources

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Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member
analytical_facility Ramaciotti
archive_ingestion_date 2016-09-12
cell_position A01
contact_researcher Mark Schembri
contextual_data_submission_date 2016-07-20
culture_collection_date 2007-06-??
culture_collection_id B36EC; MS11317
data_generated True
data_type Main dataset
experimental_replicate 1
experimental_sample_preparation_method MoBio genomic DNA extraction kit
facility RAMACIOTTI
gram_stain NEG
growth_condition_media Luria broth
growth_condition_temperature 37.0
growth_condition_time_(h) Overnight growth
growth_media Luria broth
host_disease_outcome Pyelonephritis
host_location Queensland, Australia (Queen Elizabeth II Jubilee Hosptial, Brisbane)
host_sex F
insert_size_range 15-50kb
isolation_source Blood
key_virulence_genes kpsMTII, fimH, afa/dra, iha, iutA, fyuA; Clade C2 ST131
library_construction_protocol 20kb template prep_blue pippin
omics Genomics
publication_reference PNAS.111(15):5694-9 (2014)
replicate 1
rs_version RS Remote v2.3
sample_id 102.100.100/25765
sample_submission_date 2016-07-16
sequencer PacBio RSII
sequencer_run_id m160905_053933_42272
smrt_cell_id c101094922550000001823234702241750
strain_description ST131
strain_or_isolate B36
taxon_or_organism Escherichia coli
ticket BPAOPS-3
work_order Work order 2