Sepsis Genomics Pacbio 25785

ARP Genomics Pacbio Raw Data: Streptococcus pneumoniae 4496 THY broth Replicate 1

Dataset size is: 6.54 GiB

Log in or Register to access resource
 
 

 

Data and Resources

Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member
analytical_facility Ramaciotti
archive_ingestion_date 2016-08-18
cell_position A01
contact_researcher James Paton/Richard Harvey
contextual_data_submission_date 2016-04-26
culture_collection_date 1988-06-07
data_generated True
data_type Main dataset
experimental_replicate 1
experimental_sample_preparation_method Qiagen kit with 100/G genomic tip
facility RAMACIOTTI
gram_stain POS
growth_condition_media THY broth
growth_condition_notes THY broth (recommend using filtered not autoclaved broth as some of the strains don't seem to grow when media has been overheated)
growth_condition_temperature 37.0
growth_condition_time_(h) No shaking, grow daytime
growth_media THY broth
host_location Victoria, Australia (Melbourne)
host_sex M
insert_size_range 15-50kb
isolation_source Blood
key_virulence_genes Low hemolytic Ply
library_construction_protocol 20kb template prep_blue pippin
omics Genomics
publication_reference Infect. Immun. 79(1):4122-30 (2011)
replicate 1
rs_version RS Remote v2.3
sample_id 102.100.100/25785
sample_submission_date 2016-04-26
sequencer PacBio RSII
sequencer_run_id m160811_060348_42272_
serovar 1
smrt_cell_id c101036222550000001823252711171620
strain_description Highly virulent in animal models (ST3018)
strain_or_isolate 4496
taxon_or_organism Streptococcus pneumoniae
ticket BRLOPS-849
work_order Work order 3