Sepsis Genomics Pacbio 25787

ARP Genomics Pacbio Raw Data: Streptococcus pneumoniae 4559 THY broth Replicate 1

Dataset size is: 9.30 GiB

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Data and Resources

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Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member
analytical_facility Ramaciotti
archive_ingestion_date 2016-09-12
cell_position A01
contact_researcher James Paton/Claudia Trappetti
contextual_data_submission_date 2016-04-26
culture_collection_date 1988-11-11
data_generated True
data_type Main dataset
experimental_replicate 1
experimental_sample_preparation_method Qiagen kit with 100/G genomic tip
facility RAMACIOTTI
gram_stain POS
growth_condition_media THY broth
growth_condition_notes THY broth (recommend using filtered not autoclaved broth as some of the strains don't seem to grow when media has been overheated)
growth_condition_temperature 37.0
growth_condition_time_(h) No shaking, grow daytime
growth_media THY broth
host_location South Australia, Australia (Adelaide)
insert_size_range 15-50kb
isolation_source Blood
key_virulence_genes Unknown but likely has a prophage and ~4 kb plasmid
library_construction_protocol 20kb template prep_blue pippin
omics Genomics
publication_reference Infect Immun. 83(12):4781-90 (2015)
replicate 1
rs_version RS Remote v2.3
sample_id 102.100.100/25787
sample_submission_date 2016-04-26
sequencer PacBio RSII
sequencer_run_id m160825_045353_42272
serovar 14
smrt_cell_id c101094792550000001823234702241740
strain_description ST15
strain_or_isolate 4559
taxon_or_organism Streptococcus pneumoniae
ticket BPAOPS-1
work_order Work order 3