ARP Proteomics MS1Quantification 50975
Dataset size is: 2.41 GiB
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| acquisition_mode_fragmentation | DDA Top12 / HCD |
| analytical_platform | MS1 quantification |
| archive_ingestion_date | 2018-05-15 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/sepsis/proteomics/raw/ms1quantification/mbpf/BPAOPS-606/ |
| contact_researcher | Mark Schembri |
| contextual_data_submission_date | 2017-11-14 |
| culture_collection_date | 2007-06-?? |
| culture_collection_id | B36EC; MS11317 |
| data_generated | True |
| data_type | Main dataset |
| facility | MBPF |
| facility_code | mbpf |
| gradient_time | 120.0 |
| gram_stain | NEG |
| growth_condition_growth_phase | Mid log phase |
| growth_condition_media | RPMI |
| growth_condition_od600_reading | 0.4 |
| growth_condition_temperature | 37.0 |
| growth_condition_time_(h) | 1 hr |
| growth_media | RPMI |
| host_disease_outcome | Pyelonephritis |
| host_location | Queensland, Australia (Queen Elizabeth II Jubilee Hosptial, Brisbane) |
| host_sex | F |
| isolation_source | Blood |
| key_virulence_genes | kpsMTII, fimH, afa/dra, iha, iutA, fyuA; Clade C2 ST131 |
| lc_column_type | Thermo Ultimate 3000 RSLCnano / Thermo Acclaim PepMap RSLC P/N 164540 |
| mass_spectrometer | Thermo QExactivePlus |
| omics | Proteomics |
| peptide_resuspension_protocol | Tip-probe sonicate 2x 30s in solvent intended for injection (e.g 90% MeCN/0.1% TFA) |
| publication_reference | PNAS.111(15):5694-9 (2014) |
| raw_file_name | 50975_SEP_MBPF_MS_QEPlus1_P16_0062_Exp18.raw |
| replicate | 3 |
| sample_id | 102.100.100/50975 |
| sample_on_column | 2.0 |
| sample_submission_date | 2017-11-13 |
| sample_type | HLB-cleaned dried peptides |
| strain_description | ST131 |
| strain_or_isolate | B36 |
| taxon_or_organism | Escherichia coli |
| ticket | BPAOPS-606 |
| treatment | 10mM DTT, 20mM IAA, 1:25µg trypsin 37C 24h |