ARP Transcriptomics Hiseq 50265

ARP Transcriptomics Hiseq Raw Data: Streptococcus pneumoniae 4559 Pooled sera Replicate 1

Dataset size is: 1.70 GiB

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Data and Resources

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Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member
analytical_platform HiSeq
archive_ingestion_dates 21/12/2017
barcode_tag AGCGATAG-AGGCGAAG
casava_version bcl2fastq v2.20.0.422
contact_researcher James Paton/Claudia Trappetti
contextual_data_submission_date 2017-10-31
culture_collection_date 1988-11-11
data_generated True
data_type Main dataset
facility AGRF
flow_cell_ids CC1K3ANXX, CC2K5ANXX
gram_stain POS
growth_condition_growth_phase N/A
growth_condition_media N/A
growth_condition_od600_reading 0.5
growth_condition_time_(h) 2 hrs exposure to sera
growth_media Pooled sera
host_location South Australia, Australia (Adelaide)
isolation_source Blood
key_virulence_genes Unknown but likely has a prophage and ~4 kb plasmid
library_construction_protocol TruSeq stranded RNA with Ribo-Zero Bacteria
omics Transcriptomics
publication_reference Infect Immun. 83(12):4781-90 (2015)
replicate 1
sample 50852_1
sample_id 102.100.100/50265
sample_submission_date 2017-10-31
sample_type RNA
sequencer HiSeq 2500
serovar 14
strain_description ST15
strain_or_isolate 4559
taxon_or_organism Streptococcus pneumoniae
ticket BPAOPS-445