ARP Transcriptomics Hiseq 51045

ARP Transcriptomics Hiseq Raw Data: Escherichia coli MS14384 Pooled sera Replicate 1

Dataset size is: 1.79 GiB

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Data and Resources

Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member
analytical_platform HiSeq
archive_ingestion_dates 12/02/2018
barcode_tag AGCGATAG-AGGCGAAG
casava_version bcl2fastq v2.20.0.422
contact_researcher Jon Iredell
contextual_data_submission_date 2017-11-14
culture_collection_date 2016-06-01
culture_collection_id JIE4039#1
data_generated True
data_type Main dataset
facility AGRF
flow_cell_ids CC24MANXX
gram_stain NEG
growth_condition_growth_phase N/A
growth_condition_media Pooled sera
growth_condition_od600_reading N/A
growth_condition_time_(h) 2 hrs exposure to sera
growth_media Pooled sera
host_age 62
host_disease_outcome Urosepsis and bacteraemia
host_location New South Wales, Australia (Westmead Hospital)
host_sex F
isolation_source Blood
key_virulence_genes Chromosomal blaCMY-2
library_construction_protocol TruSeq stranded RNA with Ribo-Zero Bacteria
omics Transcriptomics
replicate 1
sample 50852_1
sample_id 102.100.100/51045
sample_submission_date 2017-10-16
sample_type RNA
sequencer HiSeq 2500
strain_description ST963
strain_or_isolate MS14384
taxon_or_organism Escherichia coli
ticket BPAOPS-511
volume_ul 34.0