ARP Transcriptomics Hiseq 51049

ARP Transcriptomics Hiseq Raw Data: Escherichia coli MS14385 RPMI Replicate 1

Dataset size is: 2.01 GiB

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Data and Resources

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Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member
analytical_platform HiSeq
archive_ingestion_dates 12/02/2018
barcode_tag AGCGATAG-AGGCGAAG
casava_version bcl2fastq v2.20.0.422
contact_researcher Steven Djordjevic
contextual_data_submission_date 2017-11-14
culture_collection_id E. coli strain 2009-25
data_generated True
data_type Main dataset
facility AGRF
flow_cell_ids CC24MANXX
gram_stain NEG
growth_condition_growth_phase Mid log phase
growth_condition_media RPMI
growth_condition_od600_reading 0.4
growth_condition_time_(h) 1 hr
growth_media RPMI
host_age 72
host_disease_outcome Urosepsis
host_location New South Wales, Australia (Sydney Adventist Hospital)
host_sex M
isolation_source Blood
key_virulence_genes Multi-drug resistant extended-spectrum beta lactamase producer. Carries a copper resistance operon and hlyE. Paired urine isolate available.
library_construction_protocol TruSeq stranded RNA with Ribo-Zero Bacteria
omics Transcriptomics
replicate 1
sample 50852_1
sample_id 102.100.100/51049
sample_submission_date 2017-10-16
sample_type RNA
sequencer HiSeq 2500
strain_description ST648
strain_or_isolate MS14385
taxon_or_organism Escherichia coli
ticket BPAOPS-511
volume_ul 34.0