ARP Transcriptomics Hiseq 51138

ARP Transcriptomics Hiseq Raw Data: Streptococcus pyogenes SP444 RPMI_modified Replicate 5

Dataset size is: 2.02 GiB

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Data and Resources

Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member
analytical_platform HiSeq
barcode_tag AGCGATAG-AGGCGAAG
casava_version bcl2fastq v2.20.0.422
contact_researcher Mark Walker
contextual_data_submission_date 2018-04-05
culture_collection_date 2008-04-28
culture_collection_id SP444
data_generated True
data_type Main dataset
facility AGRF
flow_cell_ids CCRF1ANXX
gram_stain POS
growth_condition_growth_phase Mid log phase
growth_condition_media RPMI_modified
growth_condition_od600_reading 0.4
growth_condition_time_(h) 1.5 hrs
growth_media RPMI_modified
host_age NA
host_description NA
host_disease_outcome Isolated during invasive disease outbreak
host_dob 2006-02-19
host_location Queensland, Australia
host_sex M
isolation_source Blood
key_virulence_genes SpeB +ve, no capsule
library_construction_protocol TruSeq stranded RNA with Ribo-Zero Bacteria
omics Transcriptomics
publication_reference JBC 289: 32303-32315 (2014)
replicate 5
sample 50852_1
sample_id 102.100.100/51138
sample_submission_date 2018-04-05
sample_type RNA
sequencer HiSeq 2500
serovar M4
strain_description Isolated during invasive disease outbreak
strain_or_isolate SP444
taxon_or_organism Streptococcus pyogenes
ticket BPAOPS-664
volume_ul 34.0