ARP Transcriptomics Hiseq 51148

ARP Transcriptomics Hiseq Raw Data: Streptococcus pyogenes HKU419 RPMI_modified Replicate 3

Dataset size is: 2.14 GiB

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Data and Resources

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Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member
analytical_platform HiSeq
barcode_tag AGCGATAG-AGGCGAAG
casava_version bcl2fastq v2.20.0.422
contact_researcher Mark Walker
contextual_data_submission_date 2018-04-05
culture_collection_date 2012-02-23
culture_collection_id SP850
data_generated True
data_type Main dataset
facility AGRF
flow_cell_ids CCRF1ANXX
gram_stain POS
growth_condition_growth_phase Mid log phase
growth_condition_media RPMI_modified
growth_condition_od600_reading 0.4
growth_condition_time_(h) 1.5 hrs
growth_media RPMI_modified
host_age NA
host_description NA
host_disease_outcome Scarlet fever
host_dob NA
host_location Hong Kong, China
isolation_source Blood culture
key_virulence_genes SpeB +ve; Horizontally acquired virulence and resistance determinants associated with scarlet fever
library_construction_protocol TruSeq stranded RNA with Ribo-Zero Bacteria
omics Transcriptomics
publication_reference Scientific Reports 5: 15877 (2015)
replicate 3
sample 50852_1
sample_id 102.100.100/51148
sample_submission_date 2018-04-05
sample_type RNA
sequencer HiSeq 2500
serovar M1T1 clone
strain_description Isolated from ongoing outbreak (over 150,000 cases in China)
strain_or_isolate HKU419
taxon_or_organism Streptococcus pyogenes
ticket BPAOPS-664
volume_ul 34.0