Brigalow Scaly-foot, Phylogenomics, Illumina Capture, tail
Dataset size is: 0.00 Bit
Data and Resources
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350794_AHHVV2AFX2_CTTTCGTCTT_S6_... Metadata Only FASTQ
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350794_AHHVV2AFX2_CTTTCGTCTT_S6_... Metadata Only FASTQ
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350794_AHHVV2AFX2_CTTTCGTCTT_S6_... Metadata Only FASTQ
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350794_AHHVV2AFX2_CTTTCGTCTT_S6_... Metadata Only FASTQ
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350794_AHHVV2AFX2_CTTTCGTCTT_S6_... Metadata Only FASTQ
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350794_AHHVV2AFX2_CTTTCGTCTT_S6_... Metadata Only FASTQ
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350794_AHHVV2AFX2_CTTTCGTCTT_S6_... Metadata Only FASTQ
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350794_AHHVV2AFX2_CTTTCGTCTT_S6_... Metadata Only FASTQ
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2022-05-04 |
| Access Control Mode | date |
| Sequence Data Type | Illumina Capture |
| access_rights | No restrictions |
| ala_specimen_url | unknown |
| analysis_software | Bcl2Fastq |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | unknown |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/exon_capture/brf/BPAOPS-1066/ |
| certainty | NA |
| class | Reptilia |
| collection_date | 2018-11-29 |
| collection_method | Active on road |
| collector | P.M. Oliver | R.J. Laver | S.V. Nielsen |
| collector_sample_id | NA |
| common_name | Brigalow Scaly-foot |
| coord_uncertainty_metres | unknown |
| country | Australia |
| data_context | Phylogenomics |
| data_custodian | Ian Brennan |
| data_type | Illumina Capture |
| dataset_id | 102.100.100/351767 |
| date_of_transfer | 2021-05-04 |
| date_of_transfer_to_archive | 2021-05-10 |
| decimal_latitude_public | -26.90706 |
| decimal_longitude_public | 149.26062 |
| description | Short reads |
| dna_treatment | Fragmentation by Covaris |
| experimental_design | Perkin Elmer DNA-Seq Rapid 2.0 Libraries with Arbor (Daicel) Biosciences Exon Capture - dual index |
| facility | BRF |
| facility_project_code | NA |
| facility_sample_id | 349784_AHHVV2AFX2_CTTTCGTCTT |
| family | Pygopodidae |
| file_type | FASTQ |
| flowcell_id | AHHVV2AFX2 |
| flowcell_type | Mid output 300 cycles |
| folder_name | 20210504_AusARG_BRF_AHHVV2AFX2 |
| genotypic_sex | not determined |
| genus | Paradelma |
| habitat | Brigalow Belt |
| identified_by | Paul Oliver |
| insert_size_range | 150 bp PE |
| institution_name | Queensland Museum |
| latitude | -26.90706 |
| library_comments | Full library reaction; qubit 11.6 ng/uL |
| library_construction_protocol | NEXTFLEX Rapid DNA-Seq Kit 2.0 |
| library_id | 102.100.100/350794 |
| library_index_id | P7_UDI_0006 |
| library_index_id_dual | P5_UID_0006 |
| library_index_seq | CTTTCGTCTT |
| library_index_seq_dual | TTCGGTTATT |
| library_layout | paired end |
| library_location | ANU EBL Freezer |
| library_ng_ul | 11.6 |
| library_oligo_sequence | GATCGGAAGAGCACACGTCTGAACTCCAGTCAC ctttcgtcttATCTCGTATGCCGTCTTCTGCTTG |
| library_oligo_sequence_dual | AATGATACGGCGACCACCGAGATCTACAC ttcggttattACACTCTTTCCCTACACGACGCTCTTCCGATCT |
| library_pcr_cycles | 4 |
| library_pcr_reps | 1 |
| library_prep_date | 2021-02-18 |
| library_prepared_by | Ian Brennan |
| library_selection | Hybrid Selection |
| library_source | GENOMIC |
| library_strategy | Targeted-Capture |
| library_type | Exon capture |
| lifestage | adult |
| location_text | Yuleba-Surat Rd. |
| longitude | 149.26062 |
| material_conc_ng_ul | 100.0 |
| material_extracted_by | Ian Brennan |
| material_extraction_date | 2020-09-01 |
| material_extraction_method | Salt extraction |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-03-14 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20230314.xlsx |
| method_of_determination | not determined |
| n_libraries_pooled | 32 |
| order | Squamata |
| phenotypic_sex | not determined |
| phylum | Chordata |
| prior_genetics | unknown |
| project_aim | Phylogenomics |
| sample_custodian | Paul Oliver |
| sample_id | 102.100.100/349784 |
| sample_quality | unknown |
| sequencing_facility | Biomolecular Research Facility - ANU |
| sequencing_kit_chemistry_version | NextSeq 500 midoutput 300 cycles V2.5 |
| sequencing_model | NextSeq 500 |
| sequencing_platform | Illumina |
| source_population | NA |
| species | orientalis |
| species_name | Paradelma orientalis |
| specimen_id | PMO 230 |
| specimen_id_description | Paul M. Oliver Tissue Collection |
| state_or_region | Queensland |
| subspecies | NA |
| taxon_id | 592670 |
| taxonomic_group | lizard | gecko |
| ticket | BPAOPS-1066 |
| tissue_collection | Herpetology (R) |
| tissue_number | PMO 230 |
| tissue_preservation | ethanol |
| tissue_type | tail |
| type_status | non type |
| voucher_or_tissue_number | PMO 230 |
| wild_captive | wild |
| work_order | 13018 |