Bronzeback, Phylogenomics, Illumina Capture, liver

Pygopodidae, Ophidiocephalus taeniatus, SAMA R28366, lizard | gecko, Project Lead: Ian Brennan

Dataset size is: 0.00 Bit

Log in or Register to access resource
 
 

 

Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members
Access Control Date 2022-05-04
Access Control Mode date
Sequence Data Type Illumina Capture
access_rights No restrictions
ala_specimen_url https://ozcam.ala.org.au/occurrences/6c8268de-76aa-468d-b094-e4eaca29d55c
analysis_software Bcl2Fastq
ancillary_notes NA
associated_media NA
barcode_id unknown
base_url https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/exon_capture/brf/BPAOPS-1066/
certainty NA
class Reptilia
collection_date 1985-08-22
collection_method unknown
collector T. Schwaner | B. Miller | S. Sarre
collector_sample_id NA
common_name Bronzeback
coord_uncertainty_metres unknown
country Australia
data_context Phylogenomics
data_custodian Ian Brennan
data_type Illumina Capture
dataset_id 102.100.100/351767
date_of_transfer 2021-05-04
date_of_transfer_to_archive 2021-05-10
decimal_latitude_public -26.12
decimal_longitude_public 134.85
description Short reads
dna_treatment Fragmentation by Covaris
experimental_design Perkin Elmer DNA-Seq Rapid 2.0 Libraries with Arbor (Daicel) Biosciences Exon Capture - dual index
facility BRF
facility_project_code NA
facility_sample_id 349807_AHHVV2AFX2_GCTCAGTCGT
family Pygopodidae
file_type FASTQ
flowcell_id AHHVV2AFX2
flowcell_type Mid output 300 cycles
folder_name 20210504_AusARG_BRF_AHHVV2AFX2
genotypic_sex not determined
genus Ophidiocephalus
habitat unknown
identified_by unknown
insert_size_range 150 bp PE
institution_name South Australia Museum
latitude -26.12
library_comments Full library reaction; qubit 8.04 ng/uL
library_construction_protocol NEXTFLEX Rapid DNA-Seq Kit 2.0
library_id 102.100.100/350817
library_index_id P7_UDI_0029
library_index_id_dual P5_UID_0029
library_index_seq GCTCAGTCGT
library_index_seq_dual ACGAAGCCCG
library_layout paired end
library_location ANU EBL Freezer
library_ng_ul 8.04
library_oligo_sequence GATCGGAAGAGCACACGTCTGAACTCCAGTCAC gctcagtcgtATCTCGTATGCCGTCTTCTGCTTG
library_oligo_sequence_dual AATGATACGGCGACCACCGAGATCTACAC acgaagcccgACACTCTTTCCCTACACGACGCTCTTCCGATCT
library_pcr_cycles 4
library_pcr_reps 1
library_prep_date 2021-02-20
library_prepared_by Ian Brennan
library_selection Hybrid Selection
library_source GENOMIC
library_strategy Targeted-Capture
library_type Exon capture
lifestage unknown
location_text Abminga R/S
longitude 134.85
material_conc_ng_ul 116.0
material_extracted_by Ian Brennan
material_extraction_date 2020-09-01
material_extraction_method Salt extraction
material_extraction_type DNA
metadata_revision_date 2023-03-14
metadata_revision_filename AusARG_Metadata_master_QCIF_20230314.xlsx
method_of_determination not determined
n_libraries_pooled 32
order Squamata
phenotypic_sex not determined
phylum Chordata
prior_genetics unknown
project_aim Phylogenomics
sample_custodian Stephen Donnellan
sample_id 102.100.100/349807
sample_quality unknown
sequencing_facility Biomolecular Research Facility - ANU
sequencing_kit_chemistry_version NextSeq 500 midoutput 300 cycles V2.5
sequencing_model NextSeq 500
sequencing_platform Illumina
source_population NA
species taeniatus
species_name Ophidiocephalus taeniatus
specimen_id SAMA R28366
specimen_id_description South Australia Museum
state_or_region South Australia
subspecies NA
taxon_id 207563
taxonomic_group lizard | gecko
ticket BPAOPS-1066
tissue_collection Herpetology (R)
tissue_number SAMA R28366
tissue_preservation -80C | ethanol
tissue_type liver
type_status non type
voucher_or_tissue_number SAMA R28366
wild_captive wild
work_order 13018