Rufous Whipsnake|Demansia rufescens|https://biodiversity.org.au/afd/taxa/8eba6c2d-ceb7-4837-8b8e-cf2ead343de8|Rufous Whipsnake|Animalia|Elapidae, Phylogenomics, Illumina Capture, unknown
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2023-11-04 |
| Access Control Mode | date |
| Sequence Data Type | Illumina Capture |
| access_rights | No restrictions |
| ala_specimen_url | https://biocache.ala.org.au/occurrences/c2f1bacc-7d6c-4091-b7b3-f6516a84a72e |
| analysis_software | Bcl2Fastq |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | unknown |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/exon_capture/brf/BPAOPS-1370/20221104_AusARG_BRF_351851_HLYLYDRX2/ |
| certainty | NA |
| class | Reptilia |
| collection_method | unknown |
| collector | unknown |
| collector_sample_id | unknown |
| common_name | Rufous Whipsnake|Demansia rufescens|https://biodiversity.org.au/afd/taxa/8eba6c2d-ceb7-4837-8b8e-cf2ead343de8|Rufous Whipsnake|Animalia|Elapidae |
| coord_uncertainty_metres | 50000.0 |
| country | Australia |
| data_context | Phylogenomics |
| data_custodian | Damien Esquerre |
| data_type | Illumina Capture |
| dataset_id | 102.100.100/351851 |
| dataset_url | WAS BPAOPS-1337 |
| date_of_transfer | 2022-11-04 |
| date_of_transfer_to_archive | 2022-11-08 |
| decimal_latitude_public | -22.807222 |
| decimal_longitude_public | 117.75 |
| description | Short reads |
| dna_treatment | 22 biorupter cycles |
| experimental_design | Capture probes |
| facility | BRF |
| facility_project_code | NA |
| family | Elapidae |
| file_type | FASTQ |
| flowcell_id | HLYLYDRX2 |
| flowcell_type | Novaseq S1 |
| folder_name | 20221104_AusARG_BRF_351851_HLYLYDRX2 |
| genotypic_sex | not determined |
| genus | Demansia |
| habitat | unknown |
| identified_by | ANSTEE, S. |
| insert_size_range | 150bp PE |
| institution_name | Western Australian Museum |
| latitude | -22.807222 |
| library_comments | NA |
| library_construction_protocol | NEXTFLEX_2.0_RapidDNASeq |
| library_id | 102.100.100/413987 |
| library_index_id | p7_UDI_1009 |
| library_index_id_dual | p5_UDI_1009 |
| library_index_seq | CGTGACTTCT |
| library_index_seq_dual | AAGGGTGTGT |
| library_layout | paired end |
| library_location | ANU EBL Freezer |
| library_ng_ul | 8.4 |
| library_oligo_sequence | GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGTGACTTCTATCTCGTATGCCGTCTTCTGCTTG |
| library_oligo_sequence_dual | AATGATACGGCGACCACCGAGATCTACACAAGGGTGTGTACACTCTTTCCCTACACGACGCTCTTCCGATCT |
| library_pcr_cycles | 12 |
| library_pcr_reps | 2 |
| library_prep_date | 2022-09-13 |
| library_prepared_by | Liz Broady/Leo Tedeschi |
| library_selection | Hybrid Selection |
| library_source | GENOMIC |
| library_strategy | Targeted-Capture |
| library_type | Exon capture |
| lifestage | unknown |
| location_text | 5KM S MOUNT TOM PRICE MINE |
| longitude | 117.75 |
| material_conc_ng_ul | 16.639 |
| material_extracted_by | Damien Esquerre |
| material_extraction_date | 2022-07-26 |
| material_extraction_method | Qiagen Silica Column Extraction |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-03-14 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20230314.xlsx |
| method_of_determination | not determined |
| n_libraries_pooled | 192 |
| order | Squamata |
| phenotypic_sex | not determined |
| phylum | Chordata |
| prior_genetics | unknown |
| project_aim | Phylogenomics |
| sample_custodian | Scott Keogh |
| sample_id | 102.100.100/411513 |
| sample_quality | unknown |
| sequencing_facility | Biomolecular Research Facility - ANU |
| sequencing_kit_chemistry_version | 300 cycles |
| sequencing_model | NovaSeq 6000 |
| sequencing_platform | Illumina |
| source_population | NA |
| species | rufescens |
| species_name | Demansia rufescens |
| specimen_id | WAM R127815 |
| specimen_id_description | Western Australian Museum Herpetology Collection |
| state_or_region | Western Australia |
| subspecies | Demansia rufescens |
| taxon_id | 184158 |
| taxonomic_group | reptile |
| ticket | BPAOPS-1370 |
| tissue_collection | Western Australian Museum Herpetology Collection |
| tissue_number | R127815 |
| tissue_preservation | ethanol |
| tissue_type | unknown |
| type_status | unknown |
| voucher_or_tissue_number | R127815 |
| wild_captive | wild |
| work_order | 13055 |