Murray River turtle, Reference Genome, Illumina-HiC, blood
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2022-06-15 |
| Access Control Mode | date |
| Sequence Data Type | illumina-hic |
| analysis_software | Bcl2Fastq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/genomics-hi-c/BPAOPS-1084/20210611_AusARG_BRF_HCN7WDRXY/ |
| bioplatforms_dataset_id | 351742 |
| bioplatforms_library_id | 350752, 350764, 350769, 350768, 350781, 350821 |
| bioplatforms_sample_id | 349751, 349763, 349765, 349764, 349775, 349811 |
| class | Reptilia |
| common_name | Murray River turtle |
| data_context | Reference Genome |
| data_custodian | Arthur Georges |
| data_type | Illumina-HiC |
| dataset_id | 102.100.100/351741 |
| date_of_transfer | 2021-06-15 |
| date_of_transfer_to_archive | 2021-06-16 |
| description | HiC |
| dna_treatment | FA crosllinking restriction enzymes and sonication |
| experimental_design | Arima HiC 2.0 single index |
| facility | BRF |
| facility_sample_id | 350821_HCN7WDRXY_CGATGT |
| family | Chelidae |
| file_type | FASTQ |
| flowcell_id | HCN7WDRXY |
| flowcell_type | Novaseq S1 |
| folder_name | 20210611_AusARG_BRF_HCN7WDRXY |
| genus | Emydura |
| insert_size_range | 650.0 |
| library_comments | Concentration and size was assesd by Bioanalyzer and Qubit |
| library_construction_protocol | Arima HiC 2.0 |
| library_id | 350821 |
| library_index_id | Index 2 |
| library_index_seq | CGATGT |
| library_layout | paired end |
| library_location | Freezer at BRF |
| library_ng_ul | 1.3 |
| library_oligo_sequence | GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGT(AT)CTCGTATGCCGTCTTCTGCTTG |
| library_pcr_cycles | 8 |
| library_pcr_reps | 1 |
| library_prepared_by | Max Nekrasov |
| library_selection | Restriction Digest |
| library_source | GENOMIC |
| library_strategy | Hi-C |
| library_type | HiC |
| metadata_revision_date | 2023-03-14 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20230314.xlsx |
| n_libraries_pooled | 6 |
| order | Testudines |
| phylum | Chordata |
| project_aim | Reference genome |
| sample_custodian | Arthur Georges |
| sample_id | 102.100.100/349811 |
| scientific_name | Platyplectrum ornatum/Chelodina expansa/Bassiana duperreyi/Pogona vitticeps/Tiliqua rugosa/(Emydura macquarii?) |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | 300 cycles |
| sequencing_model | Illumina NovaSeq 6000 |
| sequencing_platform | ILLUMINA |
| species | macquarii |
| specimen_id | AA062704 |
| subspecies | NA |
| taxon_id | 90392 |
| ticket | BPAOPS-1084 |
| tissue_number | AA018928 |
| tissue_type | blood |
| voucher_or_tissue_number | AA018928 |
| work_order | 13015 |