prickly gecko, Reference Genome, Illumina-HiC, tail tip
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2024-04-19 |
| Access Control Mode | date |
| Sequence Data Type | illumina-hic |
| access_rights | No restrictions |
| ala_specimen_url | unknown |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | unknown |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/genomics-hi-c/BPAOPS-1382/ |
| certainty | high |
| class | Lepidosauria |
| collection_date | 2022-05-26 |
| collection_method | hand |
| collector | Kate O'Hara | Stephen Zozaya | Craig Moritz |
| collector_sample_id | CCM8104 |
| common_name | prickly gecko |
| coord_uncertainty_metres | 100.0 |
| country | Austalia |
| data_context | Reference Genome |
| data_custodian | Kate O'Hara |
| data_type | Illumina-HiC |
| dataset_id | 102.100.100/351853 |
| date_of_transfer | 2023-04-20 |
| date_of_transfer_to_archive | 2023-04-27 |
| death_date | 2022-06-10 |
| decimal_latitude_public | -26.3831 |
| decimal_longitude_public | 113.3127 |
| description | HiC |
| experimental_design | Phase Genomics Promixo HiC Kit Dual Index |
| facility | BRF |
| facility_project_code | NA |
| family | Gekkonidae |
| file_type | FASTQ |
| flowcell_id | HKWJJDMXY |
| flowcell_type | Novaseq S2 |
| folder_name | 20230417_AusARG_BRF_351853_351873_351874_351875_351876_351878_HKWJJDMXY |
| genotypic_sex | female |
| genus | Heteronotia |
| habitat | unknown |
| identified_by | Craig Moritz |
| insert_size_range | 150 bp PE |
| institution_name | The Australian National University |
| latitude | -26.3831 |
| library_comments | NA |
| library_construction_protocol | Phase Genomics Promixo HiC Kit |
| library_id | 414130 |
| library_index_id | H3 |
| library_index_id_dual | H3 |
| library_index_seq | AAGCATCG |
| library_index_seq_dual | TACTCCAG |
| library_layout | paired-end |
| library_location | ANU EBL |
| library_ng_ul | 76.0 |
| library_pcr_cycles | 12 |
| library_pcr_reps | 1 |
| library_prep_date | 2023-02-22 |
| library_prepared_by | Emily Roycroft |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_strategy | Hi-C |
| library_type | HiC |
| lifestage | adult |
| location_text | False Entrance Well |
| longitude | 113.3127 |
| material_conc_ng_ul | 96.0 |
| material_extracted_by | Kate O'Hara |
| material_extraction_date | 2022-09-15 |
| material_extraction_method | Circulomics kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-03-14 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20230314.xlsx |
| method_of_determination | observation |
| n_libraries_pooled | 5 |
| order | Squamata |
| phenotypic_sex | female |
| phylum | Chordata |
| prior_genetics | unknown |
| project_aim | Reference genome |
| sample_custodian | NA |
| sample_id | 102.100.100/411655 |
| sample_quality | very high |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | Novaseq v1.5 |
| sequencing_model | Illumina NovaSeq 6000 |
| sequencing_platform | ILLUMINA |
| source_population | NA |
| species | binoei |
| specimen_id | NA |
| specimen_id_description | NA |
| state_or_region | Western Australia |
| subspecies | NA |
| taxon_id | 13085 |
| taxonomic_group | lizard |
| ticket | BPAOPS-1382 |
| tissue_collection | NA |
| tissue_number | CCM8104 |
| tissue_preservation | frozen |
| tissue_type | tail tip |
| type_status | not a type specimen |
| voucher_or_tissue_number | CCM8104 |
| wild_captive | wild |
| work_order | 13053 |