Reference Genome, Illumina-HiC
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2024-04-19 |
| Access Control Mode | date |
| Sequence Data Type | illumina-hic |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/genomics-hi-c/BPAOPS-1382/ |
| data_context | Reference Genome |
| data_custodian | Emily Roycroft |
| data_type | Illumina-HiC |
| dataset_id | 102.100.100/351875 |
| date_of_transfer | 2023-04-20 |
| date_of_transfer_to_archive | 2023-04-27 |
| description | HiC |
| experimental_design | Phase Genomics Promixo HiC Kit Dual Index |
| facility | BRF |
| facility_project_code | NA |
| file_type | FASTQ |
| flowcell_id | HKWJJDMXY |
| flowcell_type | Novaseq S2 |
| folder_name | 20230417_AusARG_BRF_351853_351873_351874_351875_351876_351878_HKWJJDMXY |
| genus | Gehyra |
| insert_size_range | 150 bp PE |
| library_comments | NA |
| library_construction_protocol | Phase Genomics Promixo HiC Kit |
| library_id | 455800 |
| library_index_id | F3 |
| library_index_id_dual | F3 |
| library_index_seq | GTCCTAAG |
| library_index_seq_dual | TACTGCTC |
| library_layout | paired-end |
| library_location | ANU EBL |
| library_ng_ul | 9.34 |
| library_pcr_cycles | 14 |
| library_pcr_reps | 1 |
| library_prep_date | 2023-02-22 |
| library_prepared_by | Emily Roycroft |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_strategy | Hi-C |
| library_type | HiC |
| n_libraries_pooled | 5 |
| project_aim | Reference genome |
| sample_id | 102.100.100/454324 |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | Novaseq v1.5 |
| sequencing_model | Illumina NovaSeq 6000 |
| sequencing_platform | ILLUMINA |
| species | koira |
| specimen_id | CCM8055 |
| ticket | BPAOPS-1382 |
| tissue_number | CCM8055 |
| work_order | 13053 |