Eastern water dragon, None, Illumina-transcriptomics, Testes

Agamidae, Physignathus lesueurii, Phleu_18_02, lizard

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members
Access Control Date 2021-08-04
Access Control Mode date
Sequence Data Type Illumina-transcriptomics
access_rights No restrictions
ala_specimen_url unknown
analysis_software GenerateFASTQ
analysis_software_version GenerateFASTQ: 1.1.0.64
ancillary_notes Dissected at Ucanberra | Arthur Georges
associated_media Photo 0239-0242
ausarg_project Reference genome
barcode_id unknown
base_url https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-948/
bioplatforms_dataset_id 102.100.100/351721
bioplatforms_library_id 102.100.100/350722
bioplatforms_sample_id 102.100.100/349728
certainty Absolute
class Reptilia
collection_date 2018-03-20
collection_method Noose
collector Nicola Kent
collector_sample_id RSP615
common_name Eastern water dragon
coord_uncertainty_metres 100.0
country Australia
data_custodian Celine Frere
data_type Illumina-transcriptomics
dataset_id 102.100.100/351721
date_of_transfer 2020-08-04
date_of_transfer_to_archive 2020-08-25
death_date 2018-03-29
decimal_latitude_public -27.462703
decimal_longitude_public 153.018534
description RNA-seq
experimental_design Transcriptome in support of annotation
facility UNSW
facility_sample_id GEO8324A3
family Agamidae
flowcell_id HH2JJBGXG
flowcell_type NextSeq v2 Highoutput
folder_name 20200803_UNSW_AusARG_UNSW_HH2JJBGXG
genotypic_sex male
genus Physignathus
habitat Urban Park
identified_by Celine Frere | USC
insert_size_range 200_1000bp
institution_name University of the Sunshine Coast
latitude -27.462703
library_comments input amount 1ug
library_construction_protocol TruSeq Stranded mRNA
library_id 102.100.100/350722
library_index_id UDI0003
library_index_seq CCAAGTCC-CGCAGACG
library_location Ramaciotti Centre for Genomics_UNSW
library_ng_ul 1.19
library_pcr_cycles 12
library_prepared_by Ramaciotti Centre for Genomics_UNSW
library_status Sequenced
library_type RNA Seq
lifestage Sub-adult
location_text Roma Street Parklands
longitude 153.018534
material_conc_ng_ul NA
material_extracted_by Garvan
material_extraction_method NA
material_extraction_type RNA
metadata_revision_date 2023-03-14
metadata_revision_filename AusARG_Metadata_master_QCIF_20230314.xlsx
method_of_determination Visual
n_libraries_pooled 9
order Squamata
phenotypic_sex male
phylum Chordata
prior_genetics unknown
project_aim Reference genome
sample_custodian Celine Frere
sample_id 102.100.100/349728
sample_quality Good
scientific_name Physignathus lesueurii
sequencing_facility Ramaciotti
sequencing_platform NextSeq500
source_population Brisbane City
species lesueurii
specimen_id Phleu_18_02
specimen_id_description UCanberra collection
state_or_region Queensland
subspecies lesueurii
taxon_id 103694
taxonomic_group lizard
ticket BPAOPS-948
tissue_collection UC<Aus>
tissue_number Phleu_18_01_Testes
tissue_preservation Frozen
tissue_type Testes
type_status unknown
voucher_or_tissue_number Phleu_18_01_Testes
wild_captive Wild
work_order 13002