Pig-nosed turtle, None, Illumina-transcriptomics, Brain
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2021-12-03 |
| Access Control Mode | date |
| Sequence Data Type | Illumina-transcriptomics |
| access_rights | Location information restricted |
| ala_specimen_url | unknown |
| analysis_software | Illumina_basespace |
| analysis_software_version | GenerateFASTQ v1.1.0.67 |
| ancillary_notes | Eaten by Traditional Owners |
| associated_media | photo P8090071.jpg |
| ausarg_project | Reference Genome |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1000/20201202_AusARG_UNSW_HGGKCBGXH/ |
| bioplatforms_dataset_id | 102.100.100/351730 |
| bioplatforms_library_id | 102.100.100/350740 |
| bioplatforms_sample_id | 102.100.100/349740 |
| certainty | Highly likely |
| class | Reptilia |
| collection_date | 2018-08-03 |
| collector | Institute for Applied Ecology | Matthew Young | University of Canberra |
| collector_sample_id | AA072020 |
| common_name | Pig-nosed turtle |
| coord_uncertainty_metres | 10.0 |
| country | Australia |
| data_custodian | University of Canberra | Arthur Georges |
| data_type | Illumina-transcriptomics |
| dataset_id | 102.100.100/351730 |
| date_of_transfer | 2020-12-03 |
| date_of_transfer_to_archive | 2020-12-03 |
| death_date | 2018-08-03 |
| description | RNA-seq |
| experimental_design | Transcriptome in support of annotation |
| facility | UNSW |
| facility_sample_id | GEO8830A4 |
| family | Carettochelyidae |
| flowcell_id | HGGKCBGXH |
| flowcell_type | NextSeq v2.5 Highoutput |
| folder_name | 20201202_AusARG_UNSW_AHGGKCBGXH |
| genotypic_sex | not determined |
| genus | Carettochelys |
| habitat | River |
| identified_by | Institute for Applied Ecology | Matthew Young | University of Canberra |
| insert_size_range | 200_1000bp |
| institution_name | University of Canberra | Institute for Applied Ecology |
| library_comments | input amount 0.5ug |
| library_construction_protocol | Illumina Stranded mRNA |
| library_id | 102.100.100/350740 |
| library_index_id | UDP0100 |
| library_index_seq | TCAATGGA-GTTGTAGT |
| library_location | Ramaciotti Centre for Genomics_UNSW |
| library_ng_ul | 10.0 |
| library_pcr_cycles | 9 |
| library_prepared_by | Ramaciotti Centre for Genomics_UNSW |
| library_status | Sequenced |
| library_type | RNA Seq |
| lifestage | Adult organism |
| location_text | Medjing Valley | West Arnhem Land |
| metadata_revision_date | 2023-03-14 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20230314.xlsx |
| method_of_determination | External | Phallus present |
| n_libraries_pooled | 8 |
| order | Testudines |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | DArTseq (ddRADseq) | ND4 GenBank accession TBA | D-loop GenBank accession TBA |
| project_aim | Reference genome |
| sample_custodian | University of Canberra | Arthur Georges |
| sample_id | 102.100.100/349740 |
| scientific_name | Carettochelys insculpta |
| sequencing_facility | Ramaciotti_UNSW |
| sequencing_platform | NextSeq500 |
| source_population | East Alligator |
| species | insculpta |
| specimen_id | AA072680 |
| specimen_id_description | Unique identifier for the specimen/animal from the UC Wildlife Tissue Collection |
| state_or_region | Northern Territory |
| subspecies | NA |
| taxon_id | 44489 |
| taxonomic_group | turtle |
| ticket | BPAOPS-1000 |
| tissue_collection | University of Canberra | Wildlife Tissue Collection |
| tissue_number | AA072020 |
| tissue_preservation | RNAlater | Frozen -80°C |
| tissue_type | Brain |
| type_status | No |
| voucher_or_tissue_number | AA072020 |
| wild_captive | Wild |
| work_order | 13006 |