Eastern three-lined skink, None, Illumina-shortread, muscle - body
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2021-12-16 |
| Access Control Mode | date |
| Sequence Data Type | Illumina-shortread |
| access_rights | No restrictions |
| ala_specimen_url | unknown |
| analysis_software | Bcl2fastq2 v2.20 |
| analysis_software_version | v2.20 |
| ancillary_notes | NA |
| associated_media | NA |
| ausarg_project | Reference Genome |
| barcode_id | unknown |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1019/20201215_AusARG_UNSW_HTYH7DRXX/ |
| bioplatforms_dataset_id | 102.100.100/351735 |
| bioplatforms_library_id | 102.100.100/350747 |
| bioplatforms_sample_id | 102.100.100/349747 |
| certainty | High |
| class | Reptilia |
| collection_date | 2018-12-12 |
| collection_method | Field work |
| collector | Duminda Dissanayake |
| collector_sample_id | DDBD_364 |
| common_name | Eastern three-lined skink |
| coord_uncertainty_metres | 5.0 |
| country | Australia |
| data_custodian | Arthur Georges |
| data_type | Illumina-shortread |
| dataset_id | 102.100.100/351735 |
| date_of_transfer | 2020-12-16 |
| date_of_transfer_to_archive | 2020-12-18 |
| decimal_latitude_public | -35.52487778 |
| decimal_longitude_public | 148.7829583 |
| description | Short reads |
| experimental_design | IlluminaSR 250bpPE 500bp insert |
| facility | UNSW |
| facility_sample_id | GEO8864A1 |
| family | Scincidae |
| flowcell_id | HTYH7DRXX |
| flowcell_type | NovaSeq SP (lane) |
| folder_name | 20201215_AusARG_UNSW_HTYH7DRXX |
| genotypic_sex | male |
| genus | Bassiana |
| habitat | Alpine |
| identified_by | Duminda Dissanayake |
| insert_size_range | 550.0 |
| institution_name | University of Canberra |
| latitude | -35.52487778 |
| library_construction_protocol | Illumina DNA PCR-Free Prep |
| library_id | 102.100.100/350747 |
| library_index_id | UDP0095 |
| library_index_seq | GTATTCCACC-TTGTCTACAT |
| library_location | Ramaciotti Centre for Genomics_UNSW |
| library_ng_ul | 0.78 |
| library_prep_date | 2020-12-07 |
| library_prepared_by | Ramaciotti Centre for Genomics_UNSW |
| library_status | Data available |
| library_type | DNA Prep |
| lifestage | adult |
| location_text | Mt Ginini |
| longitude | 148.7829583 |
| material_conc_ng_ul | 217.0 |
| material_extracted_by | Duminda Dissanayake |
| material_extraction_date | 2020-11-23 |
| material_extraction_method | DNA - Spooling technique |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-03-14 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20230314.xlsx |
| method_of_determination | PCR sex test |
| n_libraries_pooled | 5 |
| order | Squamata |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | 10x genomics |
| project_aim | Reference genome |
| sample_custodian | Arthur Georges |
| sample_id | 102.100.100/349747 |
| sample_quality | high |
| scientific_name | Bassiana duperreyi |
| sequencing_facility | Ramaciotti_UNSW |
| sequencing_platform | NovaSeq 6000 |
| source_population | Mt Ginini |
| species | duperreyi |
| specimen_id | DDBD_364 |
| specimen_id_description | University of Canberra |
| state_or_region | ACT |
| subspecies | NA |
| taxon_id | 316450 |
| taxonomic_group | skink |
| ticket | BPAOPS-1019 |
| tissue_collection | University of Canberra |
| tissue_number | DDBD_364_A |
| tissue_preservation | ethanol |
| tissue_type | muscle - body |
| type_status | NA |
| voucher_or_tissue_number | AA094425 |
| wild_captive | wild-caught |
| work_order | 13009 |