Broad-shelled river turtle, Reference genome, Illumina-transcriptomics
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2022-10-28 |
| Access Control Mode | date |
| Sequence Data Type | Illumina-transcriptomics |
| analysis_software | bcl2fastq |
| analysis_software_version | v2.0 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1155/20211014_AusARG_UNSW_HK5GJDRXY/ |
| bioplatforms_dataset_id | 102.100.100/351746 |
| bioplatforms_library_id | 102.100.100/350763 |
| bioplatforms_sample_id | 102.100.100/349762 |
| cell_postion | n/a |
| class | Reptilia |
| common_name | Broad-shelled river turtle |
| data_context | Reference genome |
| data_custodian | Arthur Georges |
| data_type | Illumina-transcriptomics |
| dataset_id | 102.100.100/351746 |
| date_of_transfer | 2021-10-28 |
| date_of_transfer_to_archive | 2021-10-29 |
| description | RNA-seq |
| dna_treatment | n/a |
| experimental_design | Transcriptome in support of annotation |
| facility | UNSW |
| facility_project_code | Q0006827 |
| facility_sample_id | MAZ9652A6 |
| family | Chelidae |
| file_type | fastq.gz |
| flowcell_id | HK5GJDRXY |
| flowcell_type | NovaSeq SP |
| folder_name | 20211014_AusARG_UNSW_HK5GJDRXY |
| genus | Chelodina |
| insert_size_range | 100 PE |
| library_construction_protocol | Illumina mRNA prep ligation |
| library_id | 102.100.100/350763 |
| library_index_id | UDP0148B_D07 |
| library_index_seq | CCGCGTATAG-CCGGTTCCTA |
| library_layout | Paired end |
| library_location | RCG |
| library_ng_ul | 39.528 |
| library_pcr_cycles | 12 |
| library_pcr_reps | 1 |
| library_prep_date | 2021-09-28 |
| library_prepared_by | Ramaciotti Centre for Genomics |
| library_selection | PolyA |
| library_source | TRANSCRIPTOMIC |
| library_strategy | RNA-Seq |
| library_type | Illumina-transcriptomics |
| metadata_revision_date | 2023-03-14 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20230314.xlsx |
| movie_length | n/a |
| n_libraries_pooled | 17 |
| order | Testudines |
| phylum | Chordata |
| project_aim | Reference genome |
| sample_custodian | Arthur Georges |
| sample_id | 102.100.100/349762 |
| scientific_name | Chelodina expansa |
| sequencing_facility | Ramaciotti |
| sequencing_kit_chemistry_version | NovaSeq v1.5 |
| sequencing_model | Illumina NovaSeq 6000 |
| sequencing_platform | ILLUMINA |
| species | expansa |
| subspecies | NA |
| taxon_id | 665104 |
| ticket | BPAOPS-1155 |
| work_order | 13031 |