Green-eyed tree frog, Reference genome, Illumina-shortread, toe disc
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2022-06-24 |
| Access Control Mode | date |
| Sequence Data Type | Illumina-shortread |
| access_rights | No restrictions |
| ala_specimen_url | unknown |
| analysis_software | Bcl2fastq2 |
| analysis_software_version | v2.20 |
| ancillary_notes | in amplexus with CONX5984 when collected, 50 tadpoles from this mating are sampled in ethanol |
| associated_media | NA |
| barcode_id | unknown |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1097/20210621_AusARG_UNSW_HF7CFDRXY/ |
| bioplatforms_dataset_id | 102.100.100/351750 |
| bioplatforms_library_id | 102.100.100/350774 |
| bioplatforms_sample_id | 102.100.100/349770 |
| certainty | high |
| class | Amphibia |
| collection_date | 2021-02-26 |
| collection_method | spotlighting |
| collector | Conrad Hoskin | Lorenzo Bertola | James Cook University |
| collector_sample_id | CONX5985 |
| common_name | Green-eyed tree frog |
| coord_uncertainty_metres | unknown |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Megan Higgie |
| data_type | Illumina-shortread |
| dataset_id | 102.100.100/351750 |
| date_of_transfer | 2021-06-24 |
| date_of_transfer_to_archive | 2021-06-24 |
| death_date | 2021-02-28 |
| decimal_latitude_public | -17.53946 |
| decimal_longitude_public | 145.68899 |
| description | Short reads |
| experimental_design | IlluminaSR 250bpPE 500bp insert |
| facility | UNSW |
| facility_project_code | Q0005371 |
| facility_sample_id | HIG9100A1 |
| family | Hylidae |
| flowcell_id | HF7CFDRXY |
| flowcell_type | NovaSeq SP |
| folder_name | 20210621_AusARG_UNSW_HF7CFDRXY |
| genotypic_sex | not determined |
| genus | Ranoidea (Litoria) |
| habitat | tropical mixed forest biome |
| identified_by | Conrad Hoskin |
| insert_size_range | 550.0 |
| institution_name | James Cook University |
| latitude | -17.53946 |
| library_comments | 60x (heterogametic animal) |
| library_construction_protocol | Illumina DNA PCR-Free |
| library_id | 102.100.100/350774 |
| library_index_id | UDP0169-UDP0169B_A10 |
| library_index_seq | ATGTTGTTGG-TCATAGATTG |
| library_location | UNSW |
| library_ng_ul | 3.91 |
| library_prep_date | 2021-06-08 |
| library_prepared_by | Ramaciotti Centre |
| library_status | Library sequenced |
| library_type | WGA |
| lifestage | prime adult stage |
| location_text | Tributary of North Johnstone River, 200 m north-east from Mungalli Creek Dairy Café, Brooks Rd, Mungalli, |
| longitude | 145.68899 |
| material_extracted_by | Lorenzo Bertola |
| material_extraction_date | 2021-03-05 |
| material_extraction_method | chloroform (CTAB) |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-03-14 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20230314.xlsx |
| method_of_determination | presence of nuptial pads |
| n_libraries_pooled | 1 |
| order | Anura |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | unknown |
| project_aim | Reference genome |
| sample_custodian | Megan Higgie | Conrad Hoskin |
| sample_id | 102.100.100/349770 |
| sample_quality | freshly sampled |
| scientific_name | Ranoidea (Litoria) serrata |
| sequencing_facility | UNSW |
| sequencing_platform | Illumina NovaSeq 6000 |
| source_population | Australia, Queensland, Wet Tropics, Atherton tablelands |
| species | serrata |
| specimen_id | TBC |
| specimen_id_description | Queensland Museum |
| state_or_region | Queensland |
| subspecies | southern lineage |
| taxon_id | 143878 |
| taxonomic_group | frog |
| ticket | BPAOPS-1097 |
| tissue_collection | Adaptation Lab (Higgie & Hoskin) |
| tissue_number | CONX5982 |
| tissue_preservation | frozen | -20C | ethanol |
| tissue_type | toe disc |
| type_status | unknown |
| voucher_or_tissue_number | CONX5985 |
| wild_captive | wild |
| work_order | 13016 |