Green-eyed tree frog, Reference genome, Illumina-shortread, toe disc
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2022-10-29 |
| Access Control Mode | date |
| Sequence Data Type | Illumina-shortread |
| access_rights | No restrictions |
| ala_specimen_url | unknown |
| analysis_software | bcl2fastq |
| analysis_software_version | v2.0 |
| ancillary_notes | southern lineage, part of experimental crosses carried out by Conrad Hoskin to determine postzygotic reproductive isolation between northern and southern lineages of Litoria (Ranoidea) serrata |
| associated_media | NA |
| barcode_id | unknown |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1156/20211015_AusARG_UNSW_HM7TVDRXY/ |
| bioplatforms_dataset_id | 102.100.100/351745 |
| bioplatforms_library_id | 102.100.100/350777 |
| bioplatforms_sample_id | 102.100.100/349773 |
| cell_postion | n/a |
| certainty | high |
| class | Amphibia |
| collection_date | 2001-10-30 |
| collection_method | spotlighting |
| collector | Conrad Hoskin | James Cook University | Keith McDonald | QPWS |
| collector_sample_id | N74491 (QPWS) and XJF (Conrad Hoskin) |
| common_name | Green-eyed tree frog |
| coord_uncertainty_metres | unknown |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Megan Higgie |
| data_type | Illumina-shortread |
| dataset_id | 102.100.100/351745 |
| date_of_transfer | 2021-10-29 |
| date_of_transfer_to_archive | 2021-10-29 |
| decimal_latitude_public | -17.279583 |
| decimal_longitude_public | 145.631417 |
| description | Short reads |
| dna_treatment | n/a |
| experimental_design | IlluminaSR 150bpPE 450bp insert |
| facility | UNSW |
| facility_project_code | Q0007124 |
| facility_sample_id | HIG9100A4 |
| family | Hylidae |
| file_type | fastq.gz |
| flowcell_id | HM7TVDRXY |
| flowcell_type | NovaSeq S1 |
| folder_name | 20211015_AusARG_UNSW_HM7TVDRXY |
| genotypic_sex | not determined |
| genus | Ranoidea (Litoria) |
| habitat | tropical mixed forest biome |
| identified_by | Conrad Hoskin |
| insert_size_range | 150bp PE |
| institution_name | James Cook University |
| latitude | -17.279583 |
| library_comments | 15x (homogametic animal) |
| library_construction_protocol | Illumina DNA PCR-free |
| library_id | 102.100.100/350777 |
| library_index_id | UDP0147 |
| library_index_id_dual | UDP0147B |
| library_index_seq | ACGTTCCTTA |
| library_index_seq_dual | CACAGCGGTC |
| library_layout | Paired End |
| library_location | RCG |
| library_ng_ul | 1.74 |
| library_pcr_cycles | 0 |
| library_pcr_reps | 0 |
| library_prep_date | 2021-07-10 |
| library_prepared_by | Ramaciotti Centre for Genomics |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_strategy | WGA |
| library_type | Illumina-shortread |
| lifestage | prime adult stage |
| location_text | 50 m downstream from Wrights Ck Rd Bridge, Wrights Ck, Lake Eacham, |
| longitude | 145.631417 |
| material_extracted_by | Lorenzo Bertola |
| material_extraction_date | 2021-03-05 |
| material_extraction_method | chloroform (CTAB) |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-03-14 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20230314.xlsx |
| method_of_determination | size and colour. Female are much larger than males and lack nuptial pads. |
| movie_length | n/a |
| n_libraries_pooled | 5 |
| order | Anura |
| phenotypic_sex | female |
| phylum | Chordata |
| prior_genetics | sequence of COI |
| project_aim | Reference genome |
| sample_custodian | Megan Higgie | Conrad Hoskin |
| sample_id | 102.100.100/349773 |
| sample_quality | may be some degradation, old sample stored in ethanol |
| scientific_name | Ranoidea (Litoria) serrata |
| sequencing_facility | Ramaciotti |
| sequencing_kit_chemistry_version | NovaSeq v1.5 |
| sequencing_model | Illumina NovaSeq 6000 |
| sequencing_platform | ILLUMINA |
| source_population | Australia, Queensland, Wet Tropics |
| species | serrata |
| specimen_id | J85745 |
| specimen_id_description | QPWS collection, now with Queensland Musuem |
| state_or_region | Queensland |
| subspecies | southern lineage |
| taxon_id | 143878 |
| taxonomic_group | frog |
| ticket | BPAOPS-1156 |
| tissue_collection | Adaptation Lab (Hoskin) |
| tissue_number | XJF |
| tissue_preservation | frozen | -20C | ethanol |
| tissue_type | toe disc |
| type_status | unknown |
| voucher_or_tissue_number | XJF |
| wild_captive | wild |
| work_order | 13038 |