shingleback/sleepy lizard/bobtail, Reference genome, Illumina-transcriptomics, ovary
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2022-10-28 |
| Access Control Mode | date |
| Sequence Data Type | Illumina-transcriptomics |
| access_rights | No restrictions |
| ala_specimen_url | unknown |
| analysis_software | bcl2fastq |
| analysis_software_version | v2.0 |
| ancillary_notes | Animal gave birth in captivity to 3 young (27270, 27271,27272). In regards to the common name - given this is a South Australian animal is common name is the sleepy lizard rather than shingleback or bobtail. |
| associated_media | TrGF_genomeLizard1_Face.jpg; TrGF_genomeLizard1_Head.jpg; TrGF_genomeLizard1_WholeVentral.jpg; TrGF_genomeLizard1_ventralHead.jpg; TrGF_genomeLizard1_ventralTail.jpg; TrGF_genomeLizard1_WholeDorsal.jpg |
| barcode_id | unknown |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1155/20211014_AusARG_UNSW_HK5GJDRXY/ |
| bioplatforms_dataset_id | 102.100.100/351772 |
| bioplatforms_library_id | 102.100.100/350826 |
| bioplatforms_sample_id | 102.100.100/349817 |
| cell_postion | n/a |
| certainty | certain |
| class | Reptilia |
| collection_date | 2020-03-04 |
| collection_method | hand capture |
| collector | Mike Gardner |
| collector_sample_id | TRGF |
| common_name | shingleback/sleepy lizard/bobtail |
| coord_uncertainty_metres | 3.0 |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Terry Bertozzi |
| data_type | Illumina-transcriptomics |
| dataset_id | 102.100.100/351772 |
| date_of_transfer | 2021-10-28 |
| date_of_transfer_to_archive | 2021-10-29 |
| death_date | 2021-05-21 |
| decimal_latitude_public | -34.34467 |
| decimal_longitude_public | 139.35078 |
| description | RNA-seq |
| dna_treatment | n/a |
| experimental_design | Transcriptome in support of annotation |
| facility | UNSW |
| facility_project_code | Q0006827 |
| facility_sample_id | BER9605A3 |
| family | Scincidae |
| file_type | fastq.gz |
| flowcell_id | HK5GJDRXY |
| flowcell_type | NovaSeq SP |
| folder_name | 20211014_AusARG_UNSW_HK5GJDRXY |
| genotypic_sex | female |
| genus | Tiliqua |
| habitat | xeric shrubland biome |
| identified_by | Mike Gardner |
| insert_size_range | 100 PE |
| institution_name | South Australian Museum |
| latitude | -34.34467 |
| library_construction_protocol | Illumina mRNA prep ligation |
| library_id | 102.100.100/350826 |
| library_index_id | UDP0135B_G05 |
| library_index_seq | TGGCCTCTGT-CGCTGTCTCA |
| library_layout | Paired end |
| library_location | RCG |
| library_ng_ul | 98.915 |
| library_pcr_cycles | 12 |
| library_pcr_reps | 1 |
| library_prep_date | 2021-09-28 |
| library_prepared_by | Ramaciotti Centre for Genomics |
| library_selection | PolyA |
| library_source | TRANSCRIPTOMIC |
| library_strategy | RNA-Seq |
| library_type | Illumina-transcriptomics |
| lifestage | Adult organism |
| location_text | Bower Boundary Road 5.1 km west from Sturt Hwy |
| longitude | 139.35078 |
| material_conc_ng_ul | 261.0 |
| material_extracted_by | Amy Slender |
| material_extraction_date | 2021-06-22 |
| material_extraction_method | Qiagen Rneasy Mini Kit |
| material_extraction_type | RNA |
| metadata_revision_date | 2023-03-14 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20230314.xlsx |
| method_of_determination | dissection and birth |
| movie_length | n/a |
| n_libraries_pooled | 17 |
| order | Squamata |
| phenotypic_sex | female |
| phylum | Chordata |
| prior_genetics | unknown |
| project_aim | Reference genome |
| sample_custodian | Terry Bertozzi | Michael Gardner |
| sample_id | 102.100.100/349817 |
| sample_quality | excellent |
| scientific_name | Tiliqua rugosa |
| sequencing_facility | Ramaciotti |
| sequencing_kit_chemistry_version | NovaSeq v1.5 |
| sequencing_model | Illumina NovaSeq 6000 |
| sequencing_platform | ILLUMINA |
| source_population | NA |
| species | rugosa |
| specimen_id | ABTC156325 |
| specimen_id_description | South Australian Museum |
| state_or_region | South Australia |
| subspecies | NA |
| taxon_id | 8527 |
| taxonomic_group | lizard |
| ticket | BPAOPS-1155 |
| tissue_collection | Australian Biological Tissue Collection |
| tissue_number | ABTC156325 |
| tissue_preservation | liquid nitrogen | -80C |
| tissue_type | ovary |
| type_status | no |
| voucher_or_tissue_number | ABTC156325 |
| wild_captive | wild |
| work_order | 13031 |