Olive-headed seasnake, Reference Genome, Illumina-transcriptomics, liver
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2022-08-06 |
| Access Control Mode | date |
| Sequence Data Type | Illumina-transcriptomics |
| access_rights | No restrictions |
| ala_specimen_url | https://bie.ala.org.au/species/urn:lsid:biodiversity.org.au:afd.taxon:d8f6c573-1790-4d61-8069-957c2d08708e |
| analysis_software | bcl2fastq |
| analysis_software_version | v2.0 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | unknown |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1125/20210726_AusARG_UNSW_HCWGYDRXY/ |
| bioplatforms_dataset_id | 102.100.100/351777 |
| bioplatforms_library_id | 102.100.100/350840 |
| bioplatforms_sample_id | 102.100.100/349829 |
| cell_postion | n/a |
| certainty | High |
| class | Lepidosauria |
| collection_date | 2021-05-19 |
| collection_method | Wild caught from a boat at night |
| collector | Kate Sanders | James Nankivell | Jenna Crowe-Riddell | Vinay Udywer |
| collector_sample_id | KLS1130 |
| common_name | Olive-headed seasnake |
| country | Australia |
| data_context | Reference Genome |
| data_custodian | Kate Sanders |
| data_type | Illumina-transcriptomics |
| dataset_id | 102.100.100/351777 |
| date_of_transfer | 2021-08-06 |
| date_of_transfer_to_archive | 2021-08-09 |
| death_date | 2021-05-20 |
| decimal_latitude_public | -18.052242 |
| decimal_longitude_public | 122.200767 |
| description | RNA-seq |
| dna_treatment | n/a |
| experimental_design | Transcriptome in support of annotation |
| facility | UNSW |
| facility_project_code | Q0006594 |
| facility_sample_id | LUD9505A1 |
| family | Hydrophiidae |
| file_type | fastq.gz |
| flowcell_id | HCWGYDRXY |
| flowcell_type | NovaSeq S1 |
| folder_name | 20210726_AusARG_UNSW_HCWGYDRXY |
| genotypic_sex | female |
| genus | Hydrophis |
| habitat | Marine water body |
| identified_by | Kate Sanders | James Nankivell | Jenna Crowe-Riddell | Vinay Udywer |
| insert_size_range | 160.0 |
| institution_name | University of Adelaide |
| latitude | -18.052242 |
| library_construction_protocol | Illumina mRNA prep ligation |
| library_id | 102.100.100/350840 |
| library_index_id | UDP0157B_E08 |
| library_index_seq | CTAGATTGCG-CGCCATATCT |
| library_layout | Paired end |
| library_location | RCG |
| library_ng_ul | 9.62 |
| library_pcr_cycles | 12 |
| library_pcr_reps | 1 |
| library_prep_date | 2021-07-22 |
| library_prepared_by | Ramaciotti Centre for Genomics |
| library_selection | PolyA |
| library_source | TRANSCRIPTOMIC |
| library_strategy | RNA-Seq |
| library_type | Illumina-transcriptomics |
| lifestage | Adult organism |
| location_text | Indian Ocean, coast off Broome |
| longitude | 122.200767 |
| material_extracted_by | Kate Sanders |
| material_extraction_date | 2021-06-17 |
| material_extraction_method | Rneasy mini-kit |
| material_extraction_type | RNA |
| metadata_revision_date | 2023-03-14 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20230314.xlsx |
| method_of_determination | External morphology and confirmed with disection |
| movie_length | n/a |
| n_libraries_pooled | 23 |
| order | Squamata |
| phenotypic_sex | female |
| phylum | Chordata |
| project_aim | Reference genome |
| sample_custodian | Kate Sanders |
| sample_id | 102.100.100/349829 |
| sample_quality | Contamination free | snap frozen |
| scientific_name | Hydrophis major |
| sequencing_facility | Ramaciotti |
| sequencing_kit_chemistry_version | NovaSeq v1.5 |
| sequencing_model | Illumina NovaSeq 6000 |
| sequencing_platform | ILLUMINA |
| source_population | Australia, Western Australia, Broome |
| species | major |
| specimen_id | SAMAR72044 |
| specimen_id_description | South Australian Museum |
| state_or_region | Western Australia |
| subspecies | NA |
| taxon_id | 355693 |
| taxonomic_group | Snake |
| ticket | BPAOPS-1125 |
| tissue_collection | Australian Biological Tissue Collection |
| tissue_number | ABTC156318 |
| tissue_preservation | liquid nitrogen | -80 |
| tissue_type | liver |
| type_status | Not type specimen |
| voucher_or_tissue_number | SAMAR72044 |
| wild_captive | wild |
| work_order | 13017 |