Three-toed skink, Reference Genome, Illumina-transcriptomics, Lung
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2023-02-15 |
| Access Control Mode | date |
| Sequence Data Type | Illumina-transcriptomics |
| access_rights | No restrictions |
| ala_specimen_url | unknown |
| analysis_software | Bcl2Fastq2 |
| analysis_software_version | v2.20 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | unknown |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1193/20220202_AusARG_UNSW_HVNGJDRXY/ |
| bioplatforms_dataset_id | 102.100.100/351825 |
| bioplatforms_library_id | 102.100.100/354036 |
| bioplatforms_sample_id | 102.100.100/353022 |
| cell_postion | n/a |
| certainty | 1.0 |
| class | Lepidosauria |
| collection_method | Hand |
| collector | Camilla Whittington |
| common_name | Three-toed skink |
| country | Australia |
| data_context | Reference Genome |
| data_custodian | Oliver Griffith |
| data_type | Illumina-transcriptomics |
| dataset_id | 102.100.100/351825 |
| date_of_transfer | 2022-02-15 |
| date_of_transfer_to_archive | 2022-02-16 |
| description | RNA-seq |
| facility | UNSW |
| facility_project_code | Q0007337 |
| facility_sample_id | GRI10046A18 |
| family | Scincidae |
| file_type | fastq.gz |
| flowcell_id | HVNGJDRXY |
| flowcell_type | NovaSeq SP |
| folder_name | 20220202_AusARG_UNSW_HVNGJDRXY |
| genotypic_sex | not determined |
| genus | Saiphos |
| identified_by | Camilla Whittington |
| insert_size_range | 100bp PE |
| institution_name | Macquarie University |
| library_construction_protocol | Illumina stranded mRNA prep ligation |
| library_id | 102.100.100/354036 |
| library_index_id | UDP0162 |
| library_index_id_dual | UDP0162 |
| library_index_seq | TTAACGGTGT |
| library_index_seq_dual | ACGGTCAGGA |
| library_layout | paired end |
| library_location | Ramaciotti Centre for Genomics |
| library_ng_ul | 19.8 |
| library_pcr_cycles | 11 |
| library_pcr_reps | 0 |
| library_prep_date | 2022-02-01 |
| library_prepared_by | Ramaciotti Centre for Genomics |
| library_selection | PolyA |
| library_source | TRANSCRIPTOMIC |
| library_strategy | RNA-Seq |
| library_type | Illumina-transcriptomics |
| material_conc_ng_ul | 40.0 |
| material_extracted_by | Oliver Griffith |
| material_extraction_date | 2021-11-23 |
| material_extraction_method | QIAGEN RNEasy mini kit |
| material_extraction_type | RNA |
| metadata_revision_date | 2023-03-14 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20230314.xlsx |
| method_of_determination | Gonad visualisation |
| movie_length | n/a |
| n_libraries_pooled | 18 |
| order | Squamata |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | unknown |
| project_aim | Reference genome |
| sample_custodian | Camilla Whittington |
| sample_id | 102.100.100/353022 |
| scientific_name | Saiphos equalis |
| sequencing_facility | Ramaciotti Centre for Genomics |
| sequencing_kit_chemistry_version | NovaSeq v1.5 |
| sequencing_model | Illumina NovaSeq 6000 |
| sequencing_platform | ILLUMINA |
| source_population | Sydney |
| species | equalis |
| specimen_id | Se2033 |
| specimen_id_description | Thompson Lab number plus tissue type |
| state_or_region | New South Wales |
| subspecies | NA |
| taxon_id | 172942 |
| taxonomic_group | lizard |
| ticket | BPAOPS-1193 |
| tissue_collection | University of Sydney - Thompson lab |
| tissue_number | Se2033_Lung |
| tissue_preservation | Snap Frozen |
| tissue_type | Lung |
| voucher_or_tissue_number | Se2033_Lung |
| wild_captive | Wild |
| work_order | 13036 |