Three-toed skink, Reference genome, Illumina-shortread, liver
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2023-05-12 |
| Access Control Mode | date |
| Sequence Data Type | Illumina-shortread |
| access_rights | No restrictions |
| ala_specimen_url | unknown |
| analysis_software | Bcl2fastq2 |
| analysis_software_version | v2.20 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | unknown |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1245/20220506_AusARG_UNSW_HJTCJDSX3/ |
| bioplatforms_dataset_id | 102.100.100/351784 |
| bioplatforms_library_id | 102.100.100/354037 |
| bioplatforms_sample_id | 102.100.100/353023 |
| certainty | 1.0 |
| class | Lepidosauria |
| collection_date | 2017-02-21 |
| collection_method | by_hand |
| collector | Joshua_Kemsley |
| collector_sample_id | Se1625 |
| common_name | Three-toed skink |
| coord_uncertainty_metres | 100.0 |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Camilla_Whittington |
| data_type | Illumina-shortread |
| dataset_id | 102.100.100/351784 |
| date_of_transfer | 2022-05-12 |
| date_of_transfer_to_archive | 2022-05-13 |
| decimal_latitude_public | -33.980364 |
| decimal_longitude_public | 151.097412 |
| description | Short reads |
| facility | UNSW |
| facility_project_code | Q0007994 |
| facility_sample_id | WHI10436A15 |
| family | Scincidae |
| file_type | fastq.gz |
| flowcell_id | HJTCJDSX3 |
| flowcell_type | NovaSeq S4 |
| folder_name | 20220506_AusARG_UNSW_HJTCJDSX3 |
| genotypic_sex | not determined |
| genus | Saiphos |
| habitat | urban |
| identified_by | Joshua_Kemsley |
| insert_size_range | 150 PE |
| institution_name | University of Sydney |
| latitude | -33.980364 |
| library_construction_protocol | Illumina DNA PCR-Free |
| library_id | 102.100.100/354037 |
| library_index_id_dual | UDP0126-UDP0126B |
| library_index_seq_dual | AGGAGGTATC-CCAGTTGGCA |
| library_layout | paired end |
| library_location | Ramaciotti Centre for Genomics |
| library_ng_ul | 0.41 |
| library_prep_date | 2022-07-05 |
| library_prepared_by | Ramaciotti Centre for Genomics |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | Genome Short Read |
| lifestage | adult |
| location_text | Sydney_PoultonPark |
| longitude | 151.097412 |
| material_extracted_by | Camilla_Whittington |
| material_extraction_date | 2022-02-01 |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-03-14 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20230314.xlsx |
| method_of_determination | inspected gonads |
| n_libraries_pooled | 18 |
| order | Squamata |
| phenotypic_sex | female |
| phylum | Chordata |
| prior_genetics | unknown |
| project_aim | Reference genome |
| sample_custodian | Camilla Whittington |
| sample_id | 102.100.100/353023 |
| sample_quality | good |
| scientific_name | Saiphos equalis |
| sequencing_facility | Ramaciotti Centre for Genomics |
| sequencing_kit_chemistry_version | NovaSeq v1.5 |
| sequencing_model | Illumina NovaSeq 6000 |
| sequencing_platform | ILLUMINA |
| source_population | Sydney |
| species | equalis |
| specimen_id | Se1625e2 |
| specimen_id_description | female_transitional |
| state_or_region | New South Wales |
| subspecies | NA |
| taxon_id | 172942 |
| taxonomic_group | lizard |
| ticket | BPAOPS-1245 |
| tissue_collection | unknown |
| tissue_number | liver |
| tissue_preservation | RNAlater |
| tissue_type | liver |
| voucher_or_tissue_number | Se1625e2 |
| wild_captive | wild |
| work_order | 13042 |