Ornate Burrowing Frog, Reference Genome, ONT-promethion, heart/muscle
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2022-07-07 |
| Access Control Mode | date |
| Sequence Data Type | ont-promethion |
| access_rights | No restrictions |
| ala_specimen_url | unknown |
| analysis_software | MinKNOW 20.06.18, MinKNOW Core 4.0.5, Bream 6.0.10, Guppy 4.0.11 |
| analysis_software_version | MinKNOW 20.06.18, MinKNOW Core 4.0.5, Bream 6.0.10, Guppy 4.0.11 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | unknown |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/promethion/BPAOPS-1106/20210705_AusARG_RamaciottiGarvan_PAG89453/ |
| certainty | certain |
| class | Amphibia |
| collection_date | 2020-12-08 |
| collection_method | by hand |
| collector | Simon Clulow |
| collector_sample_id | NA |
| common_name | Ornate Burrowing Frog |
| coord_uncertainty_metres | 10.0 |
| country | Australia |
| data_context | Reference Genome |
| data_custodian | Renee Catullo |
| data_type | ONT-promethion |
| dataset_id | 102.100.100/351740 |
| date_of_transfer | 2021-07-07 |
| date_of_transfer_to_archive | 2021-07-07 |
| death_date | 2020-12-21 |
| decimal_latitude_public | -29.283158 |
| decimal_longitude_public | 153.013391 |
| description | PromethION |
| experimental_design | ONT PromethION |
| facility_project_code | Q0005294 |
| facility_sample_id | PBXP142368 |
| family | Limnodynastidae |
| flowcell_id | PAG89453 |
| flowcell_type | PRO002 |
| folder_name | 20210705_AusARG_RamaciottiGarvan_PAG89453 |
| genotypic_sex | not determined |
| genus | Platyplectrum |
| identified_by | Simon Clulow |
| institution_name | University of Canberra |
| latitude | -29.283158 |
| library_construction_protocol | LSK110, ligation |
| library_id | 102.100.100/350751 |
| library_layout | single |
| library_location | Garvan |
| library_prep_date | 2021-06-21 |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | ONT-PromethION |
| lifestage | adult |
| location_text | Whiporie 1 |
| longitude | 153.013391 |
| metadata_revision_date | 2023-03-14 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20230314.xlsx |
| method_of_determination | internal examination |
| order | Anura |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_custodian | Arthur Georges |
| sample_id | 102.100.100/349750 |
| sample_quality | high |
| sequencing_facility | Ramaciotti/Garvan |
| sequencing_kit_chemistry_version | LSK110 |
| sequencing_model | PromethION |
| sequencing_platform | OXFORD_NANOPORE |
| species | ornatum |
| species_name | Platyplectrum ornatum |
| specimen_id | SCL_006 |
| specimen_id_description | University of Canberra |
| state_or_region | New South Wales |
| subspecies | marmoratum |
| taxon_id | 2741728 |
| taxonomic_group | frog |
| ticket | BPAOPS-1106 |
| tissue_collection | Arthur Georges Lab |
| tissue_number | SC045/SC042 |
| tissue_preservation | frozen |
| tissue_type | heart/muscle |
| type_status | no |
| voucher_or_tissue_number | SC045/SC042 |
| wild_captive | wild |
| work_order | 13014 |