shingleback/sleepy lizard/bobtail, Reference Genome, ONT-promethion, muscle structure

Tiliqua rugosa, SAMAR71619, lizard

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Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members
Access Control Date 2022-02-03
Access Control Mode date
Sequence Data Type ont-promethion
access_rights No restrictions
ala_specimen_url unknown
analysis_software MinKNOW 20.06.9, MinKNOW Core 4.0.3, Bream 6.0.7, Guppy 4.0.11
analysis_software_version MinKNOW 20.06.9, MinKNOW Core 4.0.3, Bream 6.0.7, Guppy 4.0.11
ancillary_notes Animal was taken from bundey Bore Station homestead area and was put into captivity after the life in cold blood series in 2008. In regards to the common name - given this is a South Australian animal is common name is the sleepy lizard rather than shingleback or bobtail.
associated_media TrG_genomeLizard1_ventral.jpg; TrG_genomeLizard1_WholeDorsal.jpg; TrG_genomeLizard2_ventral.jpg; TrG_genomeLizard1_Head.jpg; TrG_GenomeLizard_4March2020_Face.jpg
barcode_id unknown
base_url https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/promethion/BPAOPS-1042/20210218_AusARG_RamaciottiGarvan_PAF14945/
cell_postion 3D
certainty certain
class Reptilia
collection_date 2008-01-01
collection_method hand capture
collector Dale Burzacott
collector_sample_id NA
common_name shingleback/sleepy lizard/bobtail
coord_uncertainty_metres unknown
country Australia
data_context Reference Genome
data_custodian Terry Bertozzi
data_type ONT-promethion
dataset_id 102.100.100/351755
date_of_transfer 2021-02-03
date_of_transfer_to_archive 2021-03-04
death_date 2020-03-04
decimal_latitude_public -33.886547
decimal_longitude_public 139.355269
description PromethION
experimental_design ONT PromethION
facility_sample_id PLPN170069-2
family Scincidae
flowcell_id PAF14945
flowcell_type FLO-PRO002
folder_name 20210218_AusARG_RamaciottiGarvan_PAF14945
genotypic_sex male
genus Tiliqua
habitat xeric shrubland biome
identified_by Mike Gardner
institution_name South Australian Museum
latitude -33.886547
library_comments genomic DNA
library_construction_protocol ULK001
library_id 102.100.100/350778
library_location Garvan
library_prep_date 2020-08-26
library_prepared_by Jill H.
library_status Data available
library_type Transposase
lifestage Adult organism
location_text Bundey Bore Station homestead
longitude 139.355269
material_conc_ng_ul 15.6 -114
material_extracted_by Terry Bertozzi
material_extraction_date 2020-08-13
material_extraction_method Circulomics Nanobind Tissue big DNA kit
material_extraction_type DNA
metadata_revision_date 2023-03-14
metadata_revision_filename AusARG_Metadata_master_QCIF_20230314.xlsx
method_of_determination dissection and sexing marker
order Squamata
phenotypic_sex male
phylum Chordata
prior_genetics spleen transcriptome
sample_custodian Terry Bertozzi | Michael Gardner
sample_id 102.100.100/349743
sample_quality excellent
sequencing_facility Ramaciotti/Garvan
sequencing_platform ONT PromethION
source_population NA
species rugosa
species_name Tiliqua rugosa
specimen_id SAMAR71619
specimen_id_description South Australian Museum
state_or_region South Australia
subspecies asper
taxon_id 8527
taxonomic_group lizard
ticket BPAOPS-1042
tissue_collection Australian Biological Tissue Collection
tissue_number ABTC151652
tissue_preservation liquid nitrogen | -80C
tissue_type muscle structure
type_status no
voucher_or_tissue_number SAMAR71619
wild_captive wild (captive since 2008)