Litchfield spotted gecko, Reference Genome, ONT-promethion, tail
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2023-11-29 |
| Access Control Mode | date |
| Sequence Data Type | ont-promethion |
| ala_specimen_url | unknown |
| analysis_software | MinKNOW Core 5.2.4, Bream 7.2.9, Guppy 6.2.11 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | unknown |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/promethion/BPAOPS-1347/20221108_AusARG_BRF_PAM11664/ |
| cell_postion | 2A |
| certainty | high |
| class | Reptilia |
| collector | Keith Christian |
| collector_sample_id | P374 |
| common_name | Litchfield spotted gecko |
| country | Australia |
| data_context | Reference Genome |
| data_custodian | Emily Roycroft |
| data_type | ONT-promethion |
| dataset_id | 102.100.100/351854 |
| dataset_url | researcher informed |
| date_of_transfer | 2022-11-29 |
| date_of_transfer_to_archive | 2022-12-01 |
| decimal_latitude_public | -13.124 |
| decimal_longitude_public | 130.804 |
| description | PromethION |
| experimental_design | WGS by ligation |
| facility_project_code | NA |
| facility_sample_id | ONT_gDNA66_419-1 |
| family | Gekkonidae |
| fast5_compression | vbz |
| file_type | fastq, fast5 |
| flowcell_id | PAM11664 |
| flowcell_type | PromethION R10.4.1M |
| folder_name | 20221108_AusARG_BRF_PAM11664 |
| genus | Gehyra |
| identified_by | Craig Moritz |
| insert_size_range | 39Kb |
| institution_name | Australian National University |
| latitude | -13.124 |
| library_comments | Genomic DNA with 20Kb+ blue pippin size selection |
| library_construction_protocol | LSK114 |
| library_id | 102.100.100/414131 |
| library_location | ANU BRF |
| library_ng_ul | 29.4 |
| library_prep_date | 2022-11-08 |
| library_prepared_by | Carolina Correa-Ospina |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | ONT PromethION |
| lifestage | adult |
| location_text | Litchfield National Park |
| longitude | 130.804 |
| material_conc_ng_ul | 177.0 |
| material_extracted_by | Emily Roycroft |
| material_extraction_date | 2022-10-12 |
| material_extraction_method | Circulomics NanoBind HMW kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-03-14 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20230314.xlsx |
| method_of_determination | external and internal mophology |
| model_base_caller | High accuracy |
| order | Squamata |
| phenotypic_sex | female |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_custodian | Craig Moritz |
| sample_id | 102.100.100/411656 |
| sample_quality | high |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | LSK114 |
| sequencing_model | PromethION |
| sequencing_platform | OXFORD_NANOPORE |
| species | paranana |
| species_name | Gehyra paranana |
| specimen_id | P374 |
| specimen_id_description | ANU tissue collection |
| state_or_region | Northern Territory |
| subspecies | NA |
| taxon_id | 95113 |
| taxonomic_group | lizard |
| ticket | BPAOPS-1347 |
| tissue_collection | Moritz Lab ANU |
| tissue_number | P374 |
| tissue_preservation | frozen -80 |
| tissue_type | tail |
| type_status | no |
| voucher_or_tissue_number | P374 |
| wild_captive | wild |
| work_order | 13051 |