Eastern Water Dragon, None, PacBio-HiFi, Blood
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2021-12-01 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | No restrictions |
| ala_specimen_url | unknown |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 9.0.0.92188 |
| ancillary_notes | NA |
| associated_media | NA |
| ausarg_project | Reference Genome |
| barcode_id | unknown |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/pacbio-hifi/BPAOPS-999/AusARG_AGRF_PacBio_C20093932_DA043669/350741_AusARG_AGRF_PacBio_DA043669_HiFi_metadata/ |
| cell_postion | B01 |
| certainty | Certain |
| class | Reptilia |
| collection_date | 2018-03-25 |
| collection_method | Hand |
| collector | Nicola Kent |
| collector_sample_id | Phleu_18_01_Blood |
| common_name | Eastern Water Dragon |
| coord_uncertainty_metres | Exact |
| country | Australia |
| data_custodian | Celine Frere |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/351732 |
| date_of_transfer | 2020-12-01 |
| date_of_transfer_to_archive | 2020-12-02 |
| death_date | 2018-04-05 |
| decimal_latitude_public | -27.462856 |
| decimal_longitude_public | 153.011834 |
| description | HiFi |
| dna_treatment | Megaruptor2 - 20kb setting |
| experimental_design | HiFi |
| facility_sample_id | Phleu_18_01a |
| family | Agamidae |
| flowcell_id | DA043669 |
| flowcell_type | SMRT Cell 8M |
| folder_name | AusARG_AGRF_PacBio_C20093932_DA043669 |
| genotypic_sex | not determined |
| genus | Physignathus |
| habitat | Built |
| identified_by | Arthur Georges |
| insert_size_range | 17461.0 |
| institution_name | University of Canberra |
| latitude | -27.462856 |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell® Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/350741 |
| library_index_id | NA |
| library_index_sequence | NA |
| library_location | AGRF |
| library_ng_ul | 70pM |
| library_oligo_sequence | NA |
| library_prep_date | 2020-10-21 |
| library_prepared_by | Trent Peters |
| library_status | Data available |
| library_type | HIFI |
| lifestage | Adult |
| location_text | Roma Street Parkland |
| longitude | 153.011834 |
| material_conc_ng_ul | 85.0 |
| material_extracted_by | Dan Powell |
| material_extraction_date | 2020-09-18 |
| material_extraction_method | Spooling |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-03-14 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20230314.xlsx |
| method_of_determination | Dissection |
| movie_length | 30hrs |
| order | Squamata |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_custodian | Arthur Georges |
| sample_id | 102.100.100/349741 |
| sample_quality | Good |
| sequencing_facility | AGRF |
| sequencing_platform | PacBio Sequel II |
| source_population | Roma Street, Brisbane |
| species | lesueurii |
| species_name | Physignathus lesueurii |
| specimen_id | Phleu_18_02 |
| specimen_id_description | ANU |
| state_or_region | Qld |
| subspecies | NA |
| taxon_id | 103694 |
| taxonomic_group | lizard |
| ticket | BPAOPS-999 |
| tissue_collection | UC<Aus> |
| tissue_number | Phleu_18_01_Blood03 |
| tissue_preservation | Frozen |
| tissue_type | Blood |
| type_status | NA |
| voucher_or_tissue_number | Phleu_18_01_Blood |
| wild_captive | Wild |
| work_order | 13007 |